RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ITCHQ96J02 903 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 EGLN2Q96KS0 407 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 MAN2B2Q9Y2E5 1009 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 C16orf96A6NNT2 1141 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 GNGT2O14610 69 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 PRPH2P23942 346 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 HALP42357 657 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 CDKN2CP42773 168 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 CTBSQ01459 385 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 PMS2P3Q13401 168 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 HSD11B1LQ7Z5J1 315 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 PLPP6Q8IY26 295 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 HS3ST5Q8IZT8 346 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 MCOLN3Q8TDD5 553 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 GFM2Q969S9 779 aaKnown RBP21.19■□□□□ 0.98
SHMT1-202ENST00000352886 TCEAL4Q96EI5 215 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 YTHDF1Q9BYJ9 559 aaKnown RBP21.19■□□□□ 0.98
SHMT1-202ENST00000352886 SMURF2Q9HAU4 748 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 DCAF13Q9NV06 445 aaKnown RBP21.19■□□□□ 0.98
SHMT1-202ENST00000352886 DNAJC11Q9NVH1 559 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 IFT80Q9P2H3 777 aaPredicted RBP21.19■□□□□ 0.98
SHMT1-202ENST00000352886 FAM8A1Q9UBU6 413 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 CDC14AQ9UNH5 594 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 NUP214P35658 2090 aaPredicted RBP21.19■□□□□ 0.98
SHMT1-202ENST00000352886 HPRP00739 348 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 ADH1AP07327 375 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 RETP07949 1114 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 CLTBP09497 229 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 CDK4P11802 303 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 SHMT2P34897 504 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 FRG2Q64ET8 278 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 CALHM3Q86XJ0 350 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 FAM9CQ8IZT9 166 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 RNF175Q8N4F7 328 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 APOLD1Q96LR9 279 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 FRG2BQ96QU4 278 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 TOR3AQ9H497 397 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 FAM83DQ9H4H8 585 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 POLR1BQ9H9Y6 1135 aa21.19■□□□□ 0.98
SHMT1-202ENST00000352886 HEMK1Q9Y5R4 338 aaPredicted RBP21.19■□□□□ 0.98
SHMT1-202ENST00000352886 A0A1W2PQ67 120 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 SLC16A5O15375 505 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 ACRP10323 421 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 TYRP14679 529 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 MAPK1P28482 360 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 RECQLP46063 649 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-202ENST00000352886 Q6ZVL8 140 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 KCTD8Q6ZWB6 473 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 CYP2U1Q7Z449 544 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 ADIPOR2Q86V24 386 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 NETO1Q8TDF5 533 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 TESCQ96BS2 214 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 ING2Q9H160 280 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 CXorf21Q9HAI6 301 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 GPRC5BQ9NZH0 403 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 TMED5Q9Y3A6 229 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 PTPRSQ13332 1948 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 NOBOXO60393 691 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 SERPINA1P01009 418 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 ZNF30P17039 623 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 PFKLP17858 780 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 PTPN6P29350 595 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 HLCSP50747 726 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 GZMMP51124 257 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 AP1S2P56377 157 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 CHIT1Q13231 466 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 RAB39AQ14964 217 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 BRAT1Q6PJG6 821 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 GPR180Q86V85 440 aa21.18■□□□□ 0.98
SHMT1-202ENST00000352886 C12orf43Q96C57 262 aaKnown RBP21.18■□□□□ 0.98
SHMT1-202ENST00000352886 OR2AG2A6NM03 316 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 CFAP99D6REC4 459 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 KPNA5O15131 536 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 B4GAT1O43505 415 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 MYCLP1P12525 358 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-202ENST00000352886 HOXB9P17482 250 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-202ENST00000352886 AMD1P17707 334 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 PFN3P60673 137 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 PPP1R8Q12972 351 aaKnown RBP21.17■□□□□ 0.98
SHMT1-202ENST00000352886 ZNF648Q5T619 568 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-202ENST00000352886 EZH1Q92800 747 aaPredicted RBP21.17■□□□□ 0.98
SHMT1-202ENST00000352886 IRF7Q92985 503 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 OSBPL10Q9BXB5 764 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 EBPLQ9BY08 206 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 LINC00597Q9H2U6 94 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 ATXN10Q9UBB4 475 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 PLXNA2O75051 1894 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 WASH3PC4AMC7 463 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 RFXANKO14593 260 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 PER2O15055 1255 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 SGTAO43765 313 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 VIPR1P32241 457 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 ETV3P41162 512 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 TEAD2Q15562 447 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 C1orf53Q5VUE5 145 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 SPESP1Q6UW49 350 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 FAM210AQ96ND0 272 aa21.17■□□□□ 0.98
SHMT1-202ENST00000352886 LEFTY1O75610 366 aa21.16■□□□□ 0.98
SHMT1-202ENST00000352886 CYP2A6P11509 494 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-202ENST00000352886 EEF1B2P24534 225 aaKnown RBP21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms