RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 GKN2Q86XP6 184 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 SLC35F3Q8IY50 421 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 KIAA2013Q8IYS2 634 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ZNF740Q8NDX6 193 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ZNF75CPQ92670 426 aaPredicted RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 PRAP1Q96NZ9 151 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 TGM7Q96PF1 710 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 EDEM2Q9BV94 578 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 SYCE1LA8MT33 242 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 BTN3A3O00478 584 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 C9P02748 559 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 HOXB3P14651 431 aaPredicted RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 ATP5F1P24539 256 aaPredicted RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 PSMA3P25788 255 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ARRB2P32121 409 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 CTSKP43235 329 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ZXDCQ2QGD7 858 aaPredicted RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 GUSBP11Q6P575 273 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 LRRC34Q8IZ02 419 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ARL14Q8N4G2 192 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 SREK1Q8WXA9 508 aaKnown RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 RAD51AP1Q96B01 352 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 GRAMD1AQ96CP6 724 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 MARK4Q96L34 752 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 IER2Q9BTL4 223 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ABCG4Q9H172 646 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 IPPKQ9H8X2 491 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ACSL5Q9ULC5 683 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 SH3BP5O60239 455 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 STK16O75716 305 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 MTHFD1P11586 935 aaKnown RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 PCNAP12004 261 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 IMPA1P29218 277 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 CCNFP41002 786 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ETV4P43268 484 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 FOXA1P55317 472 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 NME5P56597 212 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 CCDC153Q494R4 210 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 XKR6Q5GH73 641 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ZNF781Q8N8C0 355 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 MAPK15Q8TD08 544 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 SLC45A3Q96JT2 553 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 MTERF1Q99551 399 aaKnown RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 ELAC2Q9BQ52 826 aaKnown RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 TIMM29Q9BSF4 260 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 PITPNM3Q9BZ71 974 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 NUF2Q9BZD4 464 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 TNFRSF12AQ9NP84 129 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 CUEDC1Q9NWM3 386 aaPredicted RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 TM9SF1O15321 606 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 DIAPH2O60879 1101 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 OR4F21O95013 312 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 GSTM1P09488 218 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 EZRP15311 586 aaKnown RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 CD9P21926 228 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 SLC1A6P48664 564 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 CCNG1P51959 295 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 GFERP55789 205 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 GSTM4Q03013 218 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 RBBP5Q15291 538 aaKnown RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 IYDQ6PHW0 289 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 XKR5Q6UX68 686 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 ATG14Q6ZNE5 492 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 MARCH9Q86YJ5 346 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 DCUN1D3Q8IWE4 304 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 OR9A1PQ8NGU1 263 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 TFB2MQ9H5Q4 396 aaKnown RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 SEMA4GQ9NTN9 838 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 SOHLH2Q9NX45 425 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 MGAQ8IWI9 3026 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 E7EQ34 232 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 TNFRSF10CO14798 259 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 TAPBPO15533 448 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 PRPF4O43172 522 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP4-202ENST00000351842 CALRP27797 417 aaKnown RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 MAGEA12P43365 314 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 IRF8Q02556 426 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 LIPMQ5VYY2 423 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 ANKS6Q68DC2 871 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 ARMC6Q6NXE6 501 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 ZYG11AQ6WRX3 759 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 TMEM151AQ8N4L1 468 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 LINC01555Q8NAE3 123 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 OR5K2Q8NHB8 316 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 ZNF473Q8WTR7 871 aaKnown RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 ASB12Q8WXK4 309 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 RHBDF1Q96CC6 855 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 ZBTB26Q9HCK0 441 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 STARD5Q9NSY2 213 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 OXSMQ9NWU1 459 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 RNF11Q9Y3C5 154 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 COLEC10Q9Y6Z7 277 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 AKAP13Q12802 2813 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 CROCCQ5TZA2 2017 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 PRR5-ARHGAP8B1AHC4 643 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 C9JVG2 144 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 GBAP04062 536 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 C8GP07360 202 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 FGF3P11487 239 aaPredicted RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 CDH1P12830 882 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms