RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SLC30A8Q8IWU4 369 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 GSTCDQ8NEC7 633 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 DENND6BQ8NEG7 585 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 KIAA1191Q96A73 305 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 C7orf26Q96N11 449 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 CD244Q9BZW8 370 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 TMEM27Q9HBJ8 222 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 VPS29Q9UBQ0 182 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 EPHA6Q9UF33 1036 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 GTF2A1LQ9UNN4 478 aa9.9□□□□□ -0.82
USP54-201ENST00000339859 PTPRCAPQ14761 206 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 DPY19L1Q2PZI1 675 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 ZNF765Q7L2R6 523 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 GOLGA7Q7Z5G4 137 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 PIM3Q86V86 326 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 FAM20CQ8IXL6 584 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 SLC35G5Q96KT7 338 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 MYLK2Q9H1R3 596 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 SDHAF3Q9NRP4 125 aa9.9□□□□□ -0.83
USP54-201ENST00000339859 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 AGPSO00116 658 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 TK2O00142 265 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 SMAD6O43541 496 aaKnown RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 AGR2O95994 175 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 CDH1P12830 882 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 TAS2R41P59536 307 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 HSPB3Q12988 150 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 TMEFF1Q8IYR6 380 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 OLFM3Q96PB7 478 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 MMP17Q9ULZ9 603 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 STX16-NPEPL1H3BU86 382 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 STX16O14662 325 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 FKBP6O75344 327 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ZNF24P17028 368 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ERFP50548 548 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ARHGAP8P85298 464 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 CDK3Q00526 305 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 OC90Q02509 493 aaPredicted RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 DEFB133Q30KQ1 61 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 RNF43Q68DV7 783 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 DHDDSQ86SQ9 333 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 COX18Q8N8Q8 333 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ZNF527Q8NB42 609 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 GLB1L3Q8NCI6 653 aaPredicted RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 DNAJB8Q8NHS0 232 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 MTG2Q9H4K7 406 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 THUMPD1Q9NXG2 353 aaKnown RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 TMED5Q9Y3A6 229 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ATP6AP2A0A1C7CYW4 349 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 PRSS38A1L453 326 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 SCN2BO60939 215 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ATP6AP2O75787 350 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 IL6P05231 212 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 POU2F2P09086 479 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 CSNK2A2P19784 350 aaPredicted RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 VSX2P58304 361 aaPredicted RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 TRMT5Q32P41 509 aaKnown RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 FRG2Q64ET8 278 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 CLEC6AQ6EIG7 209 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ADHFE1Q8IWW8 467 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 FAM98AQ8NCA5 519 aaKnown RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 PTCD3Q96EY7 689 aaKnown RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 FRG2BQ96QU4 278 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ADI1Q9BV57 179 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ANAPC2Q9UJX6 822 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 DICER1Q9UPY3 1922 aaKnown RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 A6NCN8 305 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 NPIPB15A6NHN6 443 aaPredicted RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 MCIDASD6RGH6 385 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 PROS1P07225 676 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 EBLN1P0CF75 366 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 HOXC8P31273 242 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 EIPR1Q53HC9 387 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 FBXO48Q5FWF7 155 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 TMIGD1Q6UXZ0 262 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 LUZP2Q86TE4 346 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 RASSF5Q8WWW0 418 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 TMEM125Q96AQ2 219 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 CDRT15Q96T59 188 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 FANCFQ9NPI8 374 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ZNF282Q9UDV7 671 aaPredicted RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 SUFUQ9UMX1 484 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 C5orf67F2Z3F1 127 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ALOX5P09917 674 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 IMPDH2P12268 514 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 RPS3P23396 243 aaKnown RBP eCLIP9.89□□□□□ -0.83
USP54-201ENST00000339859 ARF5P84085 180 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 RAB6CQ53S08 254 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 TCTE1Q5JU00 501 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 COLEC12Q5KU26 742 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 ZDHHC24Q6UX98 284 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 RNF44Q7L0R7 432 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 CPSF7Q8N684 471 aaKnown RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 KIAA1958Q8N8K9 716 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 RLN3Q8WXF3 142 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 PYCR2Q96C36 320 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 RNF145Q96MT1 663 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 HOPXQ9BPY8 73 aaPredicted RBP9.89□□□□□ -0.83
USP54-201ENST00000339859 RAB6CQ9H0N0 254 aa9.89□□□□□ -0.83
USP54-201ENST00000339859 KCNN2Q9H2S1 579 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms