RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SEPHS1P49903 392 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 IRAK1BP1Q5VVH5 260 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ESRP1Q6NXG1 681 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 TAC4Q86UU9 113 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ZDHHC14Q8IZN3 488 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SMG7Q92540 1137 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 PACSIN3Q9UKS6 424 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 FBXL21Q9UKT6 434 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 PCDHGB2Q9Y5G2 931 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 SH3D21A4FU49 640 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 PSMD11O00231 422 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ECI2O75521 394 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ARSFP54793 590 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 DSC2Q02487 901 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 PLD6Q8N2A8 252 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 HAVCR2Q8TDQ0 301 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 RNF6Q9Y252 685 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 GPR25O00155 361 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ARL6IP5O75915 188 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 STOMP27105 288 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CMPK1P30085 196 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 FAM46DQ8NEK8 389 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 OR56A1Q8NGH5 318 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CMTM7Q96FZ5 175 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ADAM7Q9H2U9 754 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CAPN10Q9HC96 672 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNHIT2Q9UHR6 403 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 RIMKLBQ9ULI2 386 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 STUB1Q9UNE7 303 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 HES2Q9Y543 173 aa10.07□□□□□ -0.8
CCDC88A-202ENST00000336838 CHP2O43745 196 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 SLITRK5O94991 958 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PIGGQ5H8A4 983 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 EMID1Q96A84 441 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 BTBD1Q9H0C5 482 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 CPA4Q9UI42 421 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PRRC2BQ5JSZ5 2229 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 RLN1P04808 185 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 MPIP34949 423 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 RNASE11Q8TAA1 199 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 C12orf43Q96C57 262 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 BPIFA1Q9NP55 256 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 ZDHHC3Q9NYG2 299 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 A0A096LPI6 279 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 GTPBP1O00178 669 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 TSPAN8P19075 237 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 CD40LGP29965 261 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 HLCSP50747 726 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 TPTEP56180 551 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PHC1P78364 1004 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 LCN8Q6JVE9 175 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 GID4Q8IVV7 300 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 OR10G2Q8NGC3 310 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 SNX33Q8WV41 574 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNF516Q92618 1163 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 AHCYL2Q96HN2 611 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 LGR4Q9BXB1 951 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM248Q9NWD8 314 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 SNX10Q9Y5X0 201 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 OAS3Q9Y6K5 1087 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 MSI1O43347 362 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 HLA-DQB2P05538 268 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 FGF3P11487 239 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PRKYO43930 277 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 RAB36O95755 333 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 HSPA7P48741 367 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 KCNA10Q16322 511 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 GDPGP1Q6ZNW5 385 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 SMIM5Q71RC9 77 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 COL20A1Q9P218 1284 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 MRPS7Q9Y2R9 242 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PRAMEF33A0A0G2JMD5 474 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PRAMEF10O60809 474 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PET100P0DJ07 73 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 CBX5P45973 191 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 C2orf80Q0P641 193 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 SCARB2Q14108 478 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 SOWAHAQ2M3V2 549 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 OR8H1Q8NGG4 311 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 SUSD3Q96L08 255 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 CLIC1O00299 241 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 NFATC1O95644 943 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 ADAM8P78325 824 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PYHIN1Q6K0P9 492 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 POLR2J2Q9GZM3 115 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 STRCQ7RTU9 1775 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 H1F0P07305 194 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 IRF9Q00978 393 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 LSAMPQ13449 338 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 C9orf64Q5T6V5 341 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 FBXO22Q8NEZ5 403 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 RGMAQ96B86 450 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 FRMD6Q96NE9 622 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 PKP2Q99959 881 aa10.06□□□□□ -0.8
CCDC88A-202ENST00000336838 ANXA2P2A6NMY6 339 aa10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 SCAMP3O14828 347 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 PSIP1O75475 530 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-202ENST00000336838 ANXA2P07355 339 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms