RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CLDN3O15551 220 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CD160O95971 181 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 IGSF6O95976 241 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 OPN1MWP04001 364 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CYP1A1P04798 512 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 KLK3P07288 261 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CTSLP07711 333 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 OPN1MW2P0DN77 364 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 OPN1MW3P0DN78 364 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 VCLP18206 1134 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ENDOUP21128 410 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TACR2P21452 398 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ELK4P28324 431 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 WNT5AP41221 380 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 AGFG1P52594 562 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NUP107P57740 925 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 UBA52P62987 128 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SKP1P63208 163 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CYP24A1Q07973 514 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TMEM266Q2M3C6 531 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 STXBP5Q5T5C0 1151 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 FOXD4L5Q5VV16 416 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 EEF1DP3Q658K8 133 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 RTL6Q6ICC9 239 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ACSM6Q6P461 480 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SERPINA13PQ6UXR4 307 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 RHOUQ7L0Q8 258 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 OLIG3Q7RTU3 272 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CLEC10AQ8IUN9 316 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CHPFQ8IZ52 775 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 MPP5Q8N3R9 675 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 C19orf47Q8N9M1 422 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 OR2AP1Q8NGE2 309 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PMM1Q92871 262 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 WDR34Q96EX3 536 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 FAM71F1Q96KD3 344 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SPATA32Q96LK8 384 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CCDC43Q96MW1 224 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PWWP2AQ96N64 755 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CITED4Q96RK1 184 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 HBEGFQ99075 208 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NPY6RQ99463 290 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PKP4Q99569 1192 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 FAM173AQ9BQD7 235 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 THAP7Q9BT49 309 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TPSD1Q9BZJ3 242 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TRIM9Q9C026 710 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 GZF1Q9H116 711 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NOL6Q9H6R4 1146 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 UNKLQ9H9P5 680 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NGBQ9NPG2 151 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 HOMER2Q9NSB8 354 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SIRT5Q9NXA8 310 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SIGLEC8Q9NYZ4 499 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 STX8Q9UNK0 236 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 HPSEQ9Y251 543 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 COMMD10Q9Y6G5 202 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ZNF469Q96JG9 3925 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 IGKV3D-15A0A087WSY6 115 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CCDC66A2RUB6 948 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 USP27XA6NNY8 438 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ZNF724A8MTY0 619 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 C2orf74A8MZ97 194 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 RNASEK-C17orf49H0YIS7 233 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 C19orf84I3L1E1 186 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 GAPDHSO14556 408 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 KCNK3O14649 394 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PPEF2O14830 753 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 KATNA1O75449 491 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 STK10O94804 968 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 UBXN7O94888 489 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SNX4O95219 450 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 IGHV2-70P01814 119 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 EIF2S1P05198 315 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 MED14OSP0DP75 135 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NAT2P11245 290 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 MST1P26927 711 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SHMT2P34897 504 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SKIV2L2P42285 1042 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 BRCC3P46736 316 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PREPP48147 710 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 INSL3P51460 131 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NAPAP54920 295 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CDK3Q00526 305 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 RUNX1Q01196 453 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 RAD51Q06609 339 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 BNIP3Q12983 259 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PNOCQ13519 176 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CUL4BQ13620 913 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SERTAD2Q14140 314 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 HERPUD1Q15011 391 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 P2RY6Q15077 328 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PTPRRQ15256 657 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 DEFB109BQ30KR1 87 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ACSF3Q4G176 576 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TMEM155Q4W5P6 130 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PCID2Q5JVF3 399 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SLC25A25Q6KCM7 469 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TMEM207Q6UWW9 146 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 KIAA1324Q6UXG2 1013 aaKnown RBP1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms