RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PPP3CCP48454 512 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 HPCAP84074 193 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 PLPP4Q5VZY2 271 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 CYP2U1Q7Z449 544 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 PROSER1Q86XN7 944 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 PTRH1Q86Y79 214 aaKnown RBP16.2■□□□□ 0.18
VPS54-201ENST00000272322 SYT12Q8IV01 421 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 SLC39A11Q8N1S5 342 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 TMPRSS11EQ9UL52 423 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 CHD9Q3L8U1 2897 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 EPHA2P29317 976 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 BDKRB1P46663 353 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 C22orf39Q6P5X5 142 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 HSD11B1LQ7Z5J1 315 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 DDX53Q86TM3 631 aaKnown RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 RBM23Q86U06 439 aaKnown RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 ISG20Q96AZ6 181 aaKnown RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 DUS3LQ96G46 650 aaKnown RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 RIOK2Q9BVS4 552 aaKnown RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 AMBRA1Q9C0C7 1298 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 REXO4Q9GZR2 422 aaKnown RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 DOLKQ9UPQ8 538 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 PITPNM1O00562 1244 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 JAK1P23458 1154 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 FOXM1Q08050 763 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 ACBD5Q5T8D3 534 aaPredicted RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 TPRG1Q6ZUI0 275 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 GPR180Q86V85 440 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 SNX29P2Q8IUI4 249 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 ZNF548Q8NEK5 533 aaPredicted RBP16.19■□□□□ 0.18
VPS54-201ENST00000272322 ACDQ96AP0 544 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 HTATIP2Q9BUP3 242 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 EPB41L1Q9H4G0 881 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 ATXN10Q9UBB4 475 aa16.19■□□□□ 0.18
VPS54-201ENST00000272322 H0Y858 1186 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 KPNA3O00505 521 aaPredicted RBP16.18■□□□□ 0.18
VPS54-201ENST00000272322 OR56A5P0C7T3 313 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 SDC1P18827 310 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 PDHA2P29803 388 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 STARD3Q14849 445 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 LY6G5CQ5SRR4 150 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 SCRN2Q96FV2 425 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 TMEM121BQ9BXQ6 578 aaPredicted RBP16.18■□□□□ 0.18
VPS54-201ENST00000272322 SLC32A1Q9H598 525 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 VNN3Q9NY84 501 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 NEUROG3Q9Y4Z2 214 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 HIDE1A8MVS5 230 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 LEFTY1O75610 366 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 PRSS23O95084 383 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 ALPLP05186 524 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 CTSCP53634 463 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 TEAD2Q15562 447 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 SMN1Q16637 294 aaKnown RBP16.18■□□□□ 0.18
VPS54-201ENST00000272322 C11orf91Q3C1V1 193 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 ZNF551Q7Z340 670 aaPredicted RBP16.18■□□□□ 0.18
VPS54-201ENST00000272322 OR52J3Q8NH60 311 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 KCTD5Q9NXV2 234 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 ZDHHC3Q9NYG2 299 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 BTBD3Q9Y2F9 522 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 H3BMQ9 156 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 C1SP09871 688 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 COX7A2P14406 83 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 FPGSQ05932 587 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 DCTN2Q13561 401 aaKnown RBP16.18■□□□□ 0.18
VPS54-201ENST00000272322 RAB33AQ14088 237 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 MPPE1Q53F39 396 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 TPGS2Q68CL5 300 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 TNIP2Q8NFZ5 429 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 HM13Q8TCT9 377 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 BPIFB1Q8TDL5 484 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 ZFYVE19Q96K21 471 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 COG8Q96MW5 612 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 RAPGEFL1Q9UHV5 662 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 ABCG2Q9UNQ0 655 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 ERVK-11Q9UQG0 969 aa16.18■□□□□ 0.18
VPS54-201ENST00000272322 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.17■□□□□ 0.18
VPS54-201ENST00000272322 GNG14A0A1W2PPG7 69 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 SLC28A1O00337 649 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 TSPAN6O43657 245 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 ALDH3A2P51648 485 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 GRIN2CQ14957 1233 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 KIAA0040Q15053 153 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 CDKN3Q16667 212 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 HKDC1Q2TB90 917 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 UAP1L1Q3KQV9 507 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 ZBED5Q49AG3 693 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 Q6ZPB1 254 aaPredicted RBP16.17■□□□□ 0.18
VPS54-201ENST00000272322 PIWIL3Q7Z3Z3 882 aaKnown RBP16.17■□□□□ 0.18
VPS54-201ENST00000272322 C8orf59Q8N0T1 100 aaPredicted RBP16.17■□□□□ 0.18
VPS54-201ENST00000272322 SH3KBP1Q96B97 665 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 UGT2B28Q9BY64 529 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 TRAV19A0A0A6YYK7 116 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 E7EQ34 232 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 SCAMP1O15126 338 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 FGF18O76093 207 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 HLA-EP13747 358 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 ADRM1Q16186 407 aa16.17■□□□□ 0.18
VPS54-201ENST00000272322 USP39Q53GS9 565 aaKnown RBP16.17■□□□□ 0.18
VPS54-201ENST00000272322 PDE12Q6L8Q7 609 aaKnown RBP16.17■□□□□ 0.18
VPS54-201ENST00000272322 RIMKLAQ8IXN7 391 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms