RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SH3GL1Q99961 368 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 OSBPL11Q9BXB4 747 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 PIF1Q9H611 641 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 DYRK4Q9NR20 520 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 OBP2AQ9NY56 170 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 AP3M1Q9Y2T2 418 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 COQ6Q9Y2Z9 468 aa12.58□□□□□ -0.4
SPTLC1-201ENST00000262554 OTOL1A6NHN0 477 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 NPIPB8E9PQR5 432 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 SPINT1O43278 529 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 RECQL5O94762 991 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 ADRB3P13945 408 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 HRH2P25021 359 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 SOX11P35716 441 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 PRKCQQ04759 706 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 SELPLGQ14242 412 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 BCL7AQ4VC05 210 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 SLC44A4Q53GD3 710 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 XKR6Q5GH73 641 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 INTS11Q5TA45 600 aaKnown RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 RNF220Q5VTB9 566 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM109BQ6ICB4 259 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 PPP4R4Q6NUP7 873 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 AGTRAPQ6RW13 159 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 NLRP8Q86W28 1048 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 TBC1D21Q8IYX1 336 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 PACRGLQ8N7B6 248 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 TNIP2Q8NFZ5 429 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 VN1R2Q8NFZ6 395 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 CLHC1Q8NHS4 586 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM110BQ8TC76 370 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 BIRC7Q96CA5 298 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 MED8Q96G25 268 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 CENPNQ96H22 339 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM192AQ9GZU8 254 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 UBAP1Q9NZ09 502 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 GDE1Q9NZC3 331 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 VAPAQ9P0L0 249 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 STOX2Q9P2F5 926 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 USP22Q9UPT9 525 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 DLGAP4Q9Y2H0 992 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 AK5Q9Y6K8 562 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 DENND4AQ7Z401 1863 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 CROCCQ5TZA2 2017 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 H3BM21 787 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 AREL1O15033 823 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 LZTS3O60299 673 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 DFNA5O60443 496 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 TPST1O60507 370 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 PRAMEF4O60810 478 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 ACPPP15309 386 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 S100A3P33764 101 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 GPR1P46091 355 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 BDKRB1P46663 353 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 CYP4F3Q08477 520 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 CSTF3Q12996 717 aaKnown RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 PRAMEF9Q5VWM5 478 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 RAET1GQ6H3X3 334 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 GET4Q7L5D6 327 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 DSG4Q86SJ6 1040 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 KLHDC8AQ8IYD2 350 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 LILRA3Q8N6C8 439 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 PAPD5Q8NDF8 572 aaKnown RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 CSGALNACT1Q8TDX6 532 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 TRAPPC9Q96Q05 1148 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 SLC29A1Q99808 456 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 THUMPD3Q9BV44 507 aaKnown RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 OSBPL6Q9BZF3 934 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 RPF2Q9H7B2 306 aaKnown RBP12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 RMND5AQ9H871 391 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 C8orf4Q9NR00 106 aa12.57□□□□□ -0.4
SPTLC1-201ENST00000262554 C7orf72A4D263 438 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 GSTA4O15217 222 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 TNFAIP8O95379 198 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 SOD1P00441 154 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM58BPP0C7Q3 252 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 C6P13671 934 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 CKMT2P17540 419 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 AMD1P17707 334 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 PSMC3P17980 439 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 GGT1P19440 569 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 HNF4AP41235 474 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 CCR3P51677 355 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 NAE1Q13564 534 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 GTF2H3Q13889 308 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 PLA2G4EQ3MJ16 856 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 TERB1Q8NA31 727 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 OR2T12Q8NG77 320 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 SUSD6Q92537 303 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 TESCQ96BS2 214 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 APIPQ96GX9 242 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF583Q96ND8 569 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 TSSK3Q96PN8 268 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM129BQ96TA1 746 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 PKP4Q99569 1192 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 CENPKQ9BS16 269 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 C9orf16Q9BUW7 83 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 OR2AG1Q9H205 316 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 TMEM245Q9H330 911 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms