RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 TRIM44Q96DX7 344 aaPredicted RBP20.23■□□□□ 0.83
NEDD8-201ENST00000250495 IL17FQ96PD4 163 aa20.23■□□□□ 0.83
NEDD8-201ENST00000250495 ATP13A2Q9NQ11 1180 aa20.23■□□□□ 0.83
NEDD8-201ENST00000250495 TREX1Q9NSU2 369 aa20.23■□□□□ 0.83
NEDD8-201ENST00000250495 LUZP4Q9P127 313 aa20.23■□□□□ 0.83
NEDD8-201ENST00000250495 MARCH4Q9P2E8 410 aaPredicted RBP20.23■□□□□ 0.83
NEDD8-201ENST00000250495 CIDEBQ9UHD4 219 aa20.23■□□□□ 0.83
NEDD8-201ENST00000250495 USP9XQ93008 2570 aaPredicted RBP20.22■□□□□ 0.83
NEDD8-201ENST00000250495 A0A1B0GX78 115 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 CNOT3O75175 753 aaKnown RBP20.22■□□□□ 0.83
NEDD8-201ENST00000250495 IPO13O94829 963 aaKnown RBP20.22■□□□□ 0.83
NEDD8-201ENST00000250495 ALBP02768 609 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 RPS3P23396 243 aaKnown RBP eCLIP20.22■□□□□ 0.832e-15■■■□□ 16.4
NEDD8-201ENST00000250495 SOX8P57073 446 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 GSTA5Q7RTV2 222 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 OTOAQ7RTW8 1153 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 TAX1BP1Q86VP1 789 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 TM9SF4Q92544 642 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 FKBP10Q96AY3 582 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 FOPNLQ96NB1 174 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 P2RY12Q9H244 342 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 MAP10Q9P2G4 905 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 ZKSCAN5Q9Y2L8 839 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 PCSK5Q92824 1860 aa20.22■□□□□ 0.83
NEDD8-201ENST00000250495 TARM1B6A8C7 271 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 ONECUT2O95948 504 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 UMODP07911 640 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 GRIA3P42263 894 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 GCGRP47871 477 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 BASP1P80723 227 aaKnown RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 GRM7Q14831 915 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 SIX1Q15475 284 aaPredicted RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 PLEKHN1Q494U1 663 aaPredicted RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 FCRL6Q6DN72 434 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 IGFL3Q6UXB1 125 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 OVCH1Q7RTY7 1134 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 PPP1R32Q7Z5V6 425 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 SDCCAG8Q86SQ7 713 aaPredicted RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 IQCKQ8N0W5 287 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 LMNTD1Q8N9Z9 388 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 TTC29Q8NA56 475 aaPredicted RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 MAGEC3Q8TD91 643 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 SKA2Q8WVK7 121 aaPredicted RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 ZNF552Q9H707 407 aaPredicted RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 SLC22A11Q9NSA0 550 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 IL1RAPL1Q9NZN1 696 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 TTC7AQ9ULT0 858 aaPredicted RBP20.21■□□□□ 0.83
NEDD8-201ENST00000250495 B3GNT3Q9Y2A9 372 aa20.21■□□□□ 0.83
NEDD8-201ENST00000250495 SPTBN1Q01082 2364 aaKnown RBP20.2■□□□□ 0.82
NEDD8-201ENST00000250495 TCP11X1B4DZS4 312 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 AGPSO00116 658 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 DSCR3O14972 297 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 PFDN6O15212 129 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 PRICKLE3O43900 615 aaPredicted RBP20.2■□□□□ 0.82
NEDD8-201ENST00000250495 SRPX2O60687 465 aaPredicted RBP20.2■□□□□ 0.82
NEDD8-201ENST00000250495 C1orf105O95561 183 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 NMBRP28336 390 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 CCNFP41002 786 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 CRADDP78560 199 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 FAM214AQ32MH5 1076 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 PRR30Q53SZ7 412 aaPredicted RBP20.2■□□□□ 0.82
NEDD8-201ENST00000250495 SELENOSQ9BQE4 189 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 WDR54Q9H977 334 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 ENAMQ9NRM1 1142 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 CUTCQ9NTM9 273 aa20.2■□□□□ 0.82
NEDD8-201ENST00000250495 ICE1Q9Y2F5 2266 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 MMP11P24347 488 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 CDK16Q00536 496 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 AIMP2Q13155 320 aaKnown RBP20.19■□□□□ 0.82
NEDD8-201ENST00000250495 MRNIPQ6NTE8 343 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 ZADH2Q8N4Q0 377 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 OTUD6BQ8N6M0 293 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 HMGCLL1Q8TB92 370 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 SSC4DQ8WTU2 575 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 ZNF285Q96NJ3 590 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 KIFC1Q9BW19 673 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 SLC26A1Q9H2B4 701 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 MRM3Q9HC36 420 aaKnown RBP20.19■□□□□ 0.82
NEDD8-201ENST00000250495 HOMER3Q9NSC5 361 aa20.19■□□□□ 0.82
NEDD8-201ENST00000250495 CUEDC1Q9NWM3 386 aaPredicted RBP20.19■□□□□ 0.82
NEDD8-201ENST00000250495 SPTAN1Q13813 2472 aaKnown RBP20.18■□□□□ 0.82
NEDD8-201ENST00000250495 FGGP02679 453 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 EIF3BP55884 814 aaKnown RBP20.18■□□□□ 0.82
NEDD8-201ENST00000250495 FOXL2P58012 376 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 NKG7Q16617 165 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 EIF2S3LQ2VIR3 472 aaKnown RBP20.18■□□□□ 0.82
NEDD8-201ENST00000250495 LRRC8BQ6P9F7 803 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 SNRNP40Q96DI7 357 aaKnown RBP20.18■□□□□ 0.82
NEDD8-201ENST00000250495 VPS50Q96JG6 964 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 TCF12Q99081 682 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 CDC23Q9UJX2 597 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 NXT1Q9UKK6 140 aaKnown RBP20.18■□□□□ 0.82
NEDD8-201ENST00000250495 NFS1Q9Y697 457 aa20.18■□□□□ 0.82
NEDD8-201ENST00000250495 FITM1A5D6W6 292 aa20.17■□□□□ 0.82
NEDD8-201ENST00000250495 H3BMM5 538 aa20.17■□□□□ 0.82
NEDD8-201ENST00000250495 VAPBO95292 243 aa20.17■□□□□ 0.82
NEDD8-201ENST00000250495 TPSB2P20231 275 aa20.17■□□□□ 0.82
NEDD8-201ENST00000250495 ITGAXP20702 1163 aa20.17■□□□□ 0.82
NEDD8-201ENST00000250495 MCM3P25205 808 aa20.17■□□□□ 0.82
NEDD8-201ENST00000250495 MGAT1P26572 445 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms