RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 EEPD1Q7L9B9 569 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 GPR22Q99680 433 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PPIL3Q9H2H8 161 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 WDR26Q9H7D7 661 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ATP13A2Q9NQ11 1180 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FAM118AQ9NWS6 357 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PGAP2Q9UHJ9 254 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 N6AMT1Q9Y5N5 214 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 A0A1W2PQ67 120 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SEC14L2O76054 403 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 UCHL1P09936 223 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PIM1P11309 404 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CHRNA5P30532 468 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SLC1A2P43004 574 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 NR4A2P43354 598 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ACTBP60709 375 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ACTG1P63261 375 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PMS2P3Q13401 168 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZYXQ15942 572 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 AP5B1Q2VPB7 878 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RETSATQ6NUM9 610 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF613Q6PF04 617 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 NUDT18Q6ZVK8 323 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TMC8Q8IU68 726 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 LRRC52Q8N7C0 313 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ING5Q8WYH8 240 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CLP1Q92989 425 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PTERQ96BW5 349 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 S100A16Q96FQ6 103 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 DUS3LQ96G46 650 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SNRNP25Q9BV90 132 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 LGR4Q9BXB1 951 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ADAM7Q9H2U9 754 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TAS2R14Q9NYV8 317 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SMCO3A2RU48 225 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 NOBOXO60393 691 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RPS2P15880 293 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TPH1P17752 444 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 VARSP26640 1264 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PLA2G16P53816 162 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 DCLRE1AQ6PJP8 1040 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SECISBP2Q96T21 854 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ADAM2Q99965 735 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SPON2Q9BUD6 331 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TCAF1Q9Y4C2 921 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PIGRP01833 764 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FAM163BP0C2L3 166 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MSR1P21757 451 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CRATP43155 626 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 EMX2Q04743 252 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 COTL1Q14019 142 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PRAMEF13Q5VWM6 474 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TIFAQ96CG3 184 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TRIB3Q96RU7 358 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ELOVL4Q9GZR5 314 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PRMT8Q9NR22 394 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ENAMQ9NRM1 1142 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RBFOX1Q9NWB1 397 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TSR3Q9UJK0 312 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SLC15A5A6NIM6 579 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TOR1BO14657 336 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 OIP5O43482 229 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 GBX2P52951 348 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CLCQ05315 142 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 AIMP2Q13155 320 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ARL6IP1Q15041 203 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF630Q2M218 657 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ATAD3CQ5T2N8 411 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 HIST2H3PS2Q5TEC6 136 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FSTL4Q6MZW2 842 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LINGO4Q6UY18 593 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 OR1M1Q8NGA1 313 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ADAMTS19Q8TE59 1207 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MUL1Q969V5 352 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 NTAN1Q96AB6 310 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 BIRC7Q96CA5 298 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 DNTTIP1Q9H147 329 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PHRF1Q9P1Y6 1649 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TLR4O00206 839 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ACKR2O00590 384 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 GATCO43716 136 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FAM155BO75949 473 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 AGR2O95994 175 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 T-ENOLP0DO92 83 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ETFAP13804 333 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CKMT2P17540 419 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TAS2R40P59535 323 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CAP1Q01518 475 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CSTF1Q05048 431 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PCLAFQ15004 111 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TEX44Q53QW1 395 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PRAMEF17Q5VTA0 474 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LSMEM1Q8N8F7 131 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MARVELD3Q96A59 401 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ACDQ96AP0 544 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TESCQ96BS2 214 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CPNE2Q96FN4 548 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 METTL2AQ96IZ6 378 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CNTNAP3BQ96NU0 1288 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MTFR1LQ9H019 292 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms