RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MAP3K7O43318 606 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 USP1O94782 785 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 S1PR4O95977 384 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 RHOXF2BP0C7M4 288 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 SFTPCP11686 197 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 TCN2P20062 427 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 OAS2P29728 719 aaKnown RBP18.58■□□□□ 0.56
CLN3-260ENST00000637578 GABRA4P48169 554 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 CAV1Q03135 178 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 DNASE1L3Q13609 305 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 SLC5A12Q1EHB4 618 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 HP1BP3Q5SSJ5 553 aaPredicted RBP18.58■□□□□ 0.56
CLN3-260ENST00000637578 IGDCC3Q8IVU1 814 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 LINC01555Q8NAE3 123 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 CT55Q8WUE5 264 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 ZNF669Q96BR6 464 aaPredicted RBP18.58■□□□□ 0.56
CLN3-260ENST00000637578 TCTN2Q96GX1 697 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 RHOXF2Q9BQY4 288 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 WDR83Q9BRX9 315 aaKnown RBP18.58■□□□□ 0.56
CLN3-260ENST00000637578 KLHL25Q9H0H3 589 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 FAM60AQ9NP50 221 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 INTS10Q9NVR2 710 aaKnown RBP18.58■□□□□ 0.56
CLN3-260ENST00000637578 GEMIN8Q9NWZ8 242 aaKnown RBP18.58■□□□□ 0.56
CLN3-260ENST00000637578 VPS9D1Q9Y2B5 631 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 CRYL1Q9Y2S2 319 aa18.58■□□□□ 0.56
CLN3-260ENST00000637578 A0A0J9YY10 115 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 TMEM150CB9EJG8 249 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 H3BMH7 237 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 CD9P21926 228 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 ATP5DP30049 168 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 GPS2Q13227 327 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 TEX35Q5T0J7 233 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 PRAMEF17Q5VTA0 474 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 TRIM73Q86UV7 250 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 C19orf47Q8N9M1 422 aaKnown RBP18.57■□□□□ 0.56
CLN3-260ENST00000637578 CFAP61Q8NHU2 1237 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 EBNA1BP2Q99848 306 aaKnown RBP18.57■□□□□ 0.56
CLN3-260ENST00000637578 GPR87Q9BY21 358 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 FAM117AQ9C073 453 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 ADNPQ9H2P0 1102 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 FAM114A2Q9NRY5 505 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 STARD5Q9NSY2 213 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 ZDHHC18Q9NUE0 388 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 IL1RAPL1Q9NZN1 696 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 SERTAD3Q9UJW9 196 aa18.57■□□□□ 0.56
CLN3-260ENST00000637578 E7ESA3 106 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 NIPSNAP2O75323 286 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 MATN4O95460 622 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 C1orf105O95561 183 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 PRKAR1AP10644 381 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 RORAP35398 523 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 ELK3P41970 407 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 PDIA2Q13087 525 aaKnown RBP18.56■□□□□ 0.56
CLN3-260ENST00000637578 FASTKD3Q14CZ7 662 aaKnown RBP18.56■□□□□ 0.56
CLN3-260ENST00000637578 FAM199XQ6PEV8 388 aaPredicted RBP18.56■□□□□ 0.56
CLN3-260ENST00000637578 LMNTD2Q8IXW0 634 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 OR2L8Q8NGY9 312 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 GALPQ9UBC7 116 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 CHMP2BQ9UQN3 213 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 FAM169AQ9Y6X4 670 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 SPTBP11277 2137 aa18.56■□□□□ 0.56
CLN3-260ENST00000637578 B8ZZF3 427 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 RASGRF2O14827 1237 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 PRICKLE3O43900 615 aaPredicted RBP18.55■□□□□ 0.56
CLN3-260ENST00000637578 CREG1O75629 220 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 PKMP14618 531 aaKnown RBP18.55■□□□□ 0.56
CLN3-260ENST00000637578 PGAM1P18669 254 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 CCR10P46092 362 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 LONRF1Q17RB8 773 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 ATP1A1-AS1Q5TC04 95 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 ZNF470Q6ECI4 717 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 DSELQ8IZU8 1212 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 DNAJC22Q8N4W6 341 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 GSDMBQ8TAX9 411 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 IFT81Q8WYA0 676 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 RAD51AP1Q96B01 352 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 LRRC39Q96DD0 335 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 KLHL42Q9P2K6 505 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 TUBD1Q9UJT1 453 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 MED16Q9Y2X0 877 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 NFS1Q9Y697 457 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 TEX264Q9Y6I9 313 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 ISM1B1AKI9 464 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 MEN1O00255 615 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 HCRTR1O43613 425 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 SLU7O95391 586 aaKnown RBP18.55■□□□□ 0.56
CLN3-260ENST00000637578 FURINP09958 794 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 CLCN7P51798 805 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 ITGA1P56199 1179 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 POLE2P56282 527 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 CBLBQ13191 982 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 ANKMY2Q8IV38 441 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 DENND6AQ8IWF6 608 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 HMGCLL1Q8TB92 370 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 SLC22A18Q96BI1 424 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 IL17FQ96PD4 163 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 RAB11FIP5Q9BXF6 653 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 PLAC1Q9HBJ0 212 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 PCMTD2Q9NV79 361 aa18.55■□□□□ 0.56
CLN3-260ENST00000637578 BOD1L1Q8NFC6 3051 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms