RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 OSGEPL1Q9H4B0 414 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 CFAP20Q9Y6A4 193 aaKnown RBP16.38■□□□□ 0.21
CLN3-252ENST00000636907 PRSS38A1L453 326 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 PRR19A6NJB7 356 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 IFRD1O00458 451 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 MANBAO00462 879 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 SCAMP1O15126 338 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 GSC2O15499 205 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 SLC35G4P0C7Q5 338 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 OXTRP30559 389 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 MAGEA9P43362 315 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CLCNKAP51800 687 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 MNAT1P51948 309 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 MXRA7P84157 204 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CHIT1Q13231 466 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 PTK2BQ14289 1009 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CPSF6Q16630 551 aaKnown RBP eCLIP16.37■□□□□ 0.21
CLN3-252ENST00000636907 KIAA0895LQ68EN5 471 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 OGFOD2Q6N063 350 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 ENPP7Q6UWV6 458 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 GK5Q6ZS86 529 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 RNF165Q6ZSG1 346 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 DCUN1D3Q8IWE4 304 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 FRMD1Q8N878 549 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 LMNTD1Q8N9Z9 388 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 TMEM145Q8NBT3 493 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 MAFAQ8NHW3 353 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 RP9Q8TA86 221 aaKnown RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 MAGEC3Q8TD91 643 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 OR1E3Q8WZA6 343 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 WDR92Q96MX6 357 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 RAB3IPQ96QF0 476 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 TPSD1Q9BZJ3 242 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CARS2Q9HA77 564 aaKnown RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 FARSBQ9NSD9 589 aaKnown RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 MRGBPQ9NV56 204 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 WSB2Q9NYS7 404 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 WDR37Q9Y2I8 494 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 C19orf67A6NJJ6 358 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 PSMD12O00232 456 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 KCNJ13O60928 360 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 ULK1O75385 1050 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 APBB3O95704 486 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 THRAP10827 490 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CPOXP36551 454 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 HALP42357 657 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CCR5P51681 352 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 TBPL1P62380 186 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CYLC2Q14093 348 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 FASTKQ14296 549 aaKnown RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 SGO1Q5FBB7 561 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 C6orf136Q5SQH8 315 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CAPRIN2Q6IMN6 1127 aaKnown RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 SPATA19Q7Z5L4 167 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 LRRC56Q8IYG6 542 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 C10orf67Q8IYJ2 551 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 SYTL1Q8IYJ3 562 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 OR5K2Q8NHB8 316 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 USP7Q93009 1102 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 RAD51AP1Q96B01 352 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 PDXPQ96GD0 296 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 NELL2Q99435 816 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 GPR174Q9BXC1 333 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 C1orf21Q9H246 121 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 ZNF490Q9ULM2 529 aaPredicted RBP16.37■□□□□ 0.21
CLN3-252ENST00000636907 PLAGL1Q9UM63 463 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 CCL27Q9Y4X3 112 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 HS3ST3A1Q9Y663 406 aa16.37■□□□□ 0.21
CLN3-252ENST00000636907 TRIOO75962 3097 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 E7EQ34 232 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 WFS1O76024 890 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 KELP23276 732 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 CD6P30203 668 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 PNLIPRP1P54315 467 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 DIO3P55073 304 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 STX1BP61266 288 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 IRF8Q02556 426 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 CUL3Q13618 768 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 KIF19Q2TAC6 998 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 ATP6AP1LQ52LC2 224 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 CAPN13Q6MZZ7 669 aaPredicted RBP16.36■□□□□ 0.21
CLN3-252ENST00000636907 DUS1LQ6P1R4 473 aaKnown RBP16.36■□□□□ 0.21
CLN3-252ENST00000636907 PAOXQ6QHF9 649 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 RLN3Q8WXF3 142 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 MTFMTQ96DP5 389 aaKnown RBP16.36■□□□□ 0.21
CLN3-252ENST00000636907 IL17FQ96PD4 163 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 OR2M4Q96R27 311 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 INSM2Q96T92 566 aaPredicted RBP16.36■□□□□ 0.21
CLN3-252ENST00000636907 RTKNQ9BST9 563 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 TBC1D17Q9HA65 648 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 PRDM4Q9UKN5 801 aa16.36■□□□□ 0.21
CLN3-252ENST00000636907 TDRKHQ9Y2W6 561 aaKnown RBP16.36■□□□□ 0.21
CLN3-252ENST00000636907 E7ENX8 843 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 LSM1O15116 133 aaKnown RBP16.35■□□□□ 0.21
CLN3-252ENST00000636907 KRT6AP02538 564 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 KRT6BP04259 564 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 RPN2P04844 631 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 GPX3P22352 226 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 HTR1BP28222 390 aa16.35■□□□□ 0.21
CLN3-252ENST00000636907 KRT6CP48668 564 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms