RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 VKORC1Q9BQB6 163 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 RNF32Q9H0A6 362 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 UBP1Q9NZI7 540 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.89□□□□□ -0.19
CLN3-249ENST00000636685 ST6GALNAC2Q9UJ37 374 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 C3orf18Q9UK00 162 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 SCN2AQ99250 2005 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 NBEAL1Q6ZS30 2694 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 ZRANB2O95218 330 aaKnown RBP eCLIP13.88□□□□□ -0.19
CLN3-249ENST00000636685 ZWINTO95229 277 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 MYBL2P10244 700 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 ITGAMP11215 1152 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 GJC1P36383 396 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 FANCCQ00597 558 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 HSF1Q00613 529 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 ALDH6A1Q02252 535 aaKnown RBP13.88□□□□□ -0.19
CLN3-249ENST00000636685 TFF3Q07654 80 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 PPIDQ08752 370 aaKnown RBP13.88□□□□□ -0.19
CLN3-249ENST00000636685 MYBPHQ13203 477 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 PIGHQ14442 188 aaPredicted RBP13.88□□□□□ -0.19
CLN3-249ENST00000636685 PCOLCEQ15113 449 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 CNSTQ6PJW8 725 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 ARHGEF18Q6ZSZ5 1173 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 CXXC5Q7LFL8 322 aaKnown RBP13.88□□□□□ -0.19
CLN3-249ENST00000636685 NLRP9Q7RTR0 991 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 PQLC3Q8N755 202 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 STT3BQ8TCJ2 826 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 UCK2Q9BZX2 261 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 TRABDQ9H4I3 376 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 COG4Q9H9E3 785 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 MRPL47Q9HD33 250 aaKnown RBP13.88□□□□□ -0.19
CLN3-249ENST00000636685 DNAJB12Q9NXW2 375 aaKnown RBP13.88□□□□□ -0.19
CLN3-249ENST00000636685 KCNN3Q9UGI6 736 aa13.88□□□□□ -0.19
CLN3-249ENST00000636685 FAM90A27PA6NNH2 459 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 ZGLP1P0C6A0 271 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 PEBP1P30086 187 aaKnown RBP13.87□□□□□ -0.19
CLN3-249ENST00000636685 SSR1P43307 286 aaKnown RBP13.87□□□□□ -0.19
CLN3-249ENST00000636685 CHRNA4P43681 627 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 MEOX1P50221 254 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 RAB28P51157 221 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 ZNF33BQ06732 778 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 AP1B1Q10567 949 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 DSG2Q14126 1118 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 ABHD17BQ5VST6 288 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 NEK10Q6ZWH5 1172 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 GLT6D1Q7Z4J2 308 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 LAPTM4BQ86VI4 370 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 CHERPQ8IWX8 916 aaKnown RBP13.87□□□□□ -0.19
CLN3-249ENST00000636685 TAB3Q8N5C8 712 aaPredicted RBP13.87□□□□□ -0.19
CLN3-249ENST00000636685 SLC25A41Q8N5S1 370 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 OR5AR1Q8NGP9 310 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 BLOC1S5Q8TDH9 187 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 DENND1AQ8TEH3 1009 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 TFGQ92734 400 aaPredicted RBP13.87□□□□□ -0.19
CLN3-249ENST00000636685 MIEF2Q96C03 454 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 ARSGQ96EG1 525 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 HES7Q9BYE0 225 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 STMN3Q9NZ72 180 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 PLEKHA6Q9Y2H5 1048 aa13.87□□□□□ -0.19
CLN3-249ENST00000636685 ATRQ13535 2644 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 ISM1B1AKI9 464 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 TOXO94900 526 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 MLYCDO95822 493 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 TPM2P07951 284 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 CCDC172P0C7W6 258 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 TPBGLP0DKB5 382 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 MAGP20916 626 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 MSX1P28360 303 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 SHMT2P34897 504 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 CD151P48509 253 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 PRLHRP49683 370 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 SLC14A2Q15849 920 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 SIRPB2Q5JXA9 342 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 CEP128Q6ZU80 1094 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 CPNE8Q86YQ8 564 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 NIPA2Q8N8Q9 360 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 KCTD6Q8NC69 237 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 ZNF670Q9BS34 389 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 GLOD4Q9HC38 313 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 ZNF358Q9NW07 568 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 PLAGL1Q9UM63 463 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 PKP3Q9Y446 797 aa13.86□□□□□ -0.19
CLN3-249ENST00000636685 FBN1P35555 2871 aaKnown RBP13.85□□□□□ -0.19
CLN3-249ENST00000636685 IGHV1-45A0A0A0MS14 117 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 TTI1O43156 1089 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 PROM1O43490 865 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 ASNA1O43681 348 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 MED26O95402 600 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 TSPAN12O95859 305 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 HOXD4P09016 255 aaPredicted RBP13.85□□□□□ -0.19
CLN3-249ENST00000636685 GZMAP12544 262 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 GRIA3P42263 894 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 ST13P50502 369 aaKnown RBP13.85□□□□□ -0.19
CLN3-249ENST00000636685 OCA2Q04671 838 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 GRM7Q14831 915 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 ZNF658BQ4V348 819 aaPredicted RBP13.85□□□□□ -0.19
CLN3-249ENST00000636685 CDKAL1Q5VV42 579 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 CLEC9AQ6UXN8 241 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 RIPOR1Q6ZS17 1223 aa13.85□□□□□ -0.19
CLN3-249ENST00000636685 ZNF571Q7Z3V5 609 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms