RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FBXO38Q6PIJ6 1188 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 PAQR3Q6TCH7 311 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 ZC3HC1Q86WB0 502 aaKnown RBP20.02■□□□□ 0.8
CLN3-240ENST00000631023 PPP1R3BQ86XI6 285 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 OR9A1PQ8NGU1 263 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 ASB11Q8WXH4 323 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 TWSG1Q9GZX9 223 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 SYTL2Q9HCH5 934 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 LRRC4CQ9HCJ2 640 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 SPATA7Q9P0W8 599 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 RARRES3Q9UL19 164 aa20.02■□□□□ 0.8
CLN3-240ENST00000631023 ARHGEF33A8MVX0 844 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 EBLN1P0CF75 366 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 FGF5P12034 268 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 STX2P32856 288 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 HSD17B2P37059 387 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 GPX6P59796 221 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 IL2P60568 153 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 TUBB4BP68371 445 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 KCNAB1Q14722 419 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 SLC5A12Q1EHB4 618 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 CYHR1Q6ZMK1 362 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 RASGRP3Q8IV61 690 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 LINC01555Q8NAE3 123 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 FBXO15Q8NCQ5 510 aaPredicted RBP20.01■□□□□ 0.79
CLN3-240ENST00000631023 HMGCLL1Q8TB92 370 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 EEF1AKMT1Q8WVE0 214 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 HNRNPLLQ8WVV9 542 aaKnown RBP20.01■□□□□ 0.79
CLN3-240ENST00000631023 ELMO2Q96JJ3 720 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 IL17FQ96PD4 163 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 TRAPPC9Q96Q05 1148 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 CPNE1Q99829 537 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 RHOJQ9H4E5 214 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 FANCEQ9HB96 536 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 FGF21Q9NSA1 209 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 WDR70Q9NW82 654 aa20.01■□□□□ 0.79
CLN3-240ENST00000631023 A0A0J9YY10 115 aa20■□□□□ 0.79
CLN3-240ENST00000631023 ZNF839A8K0R7 811 aa20■□□□□ 0.79
CLN3-240ENST00000631023 GFYI3L273 518 aa20■□□□□ 0.79
CLN3-240ENST00000631023 ST6GAL1P15907 406 aa20■□□□□ 0.79
CLN3-240ENST00000631023 FDXRP22570 491 aa20■□□□□ 0.79
CLN3-240ENST00000631023 ITPKBP27987 946 aa20■□□□□ 0.79
CLN3-240ENST00000631023 CLN3Q13286 438 aa20■□□□□ 0.79
CLN3-240ENST00000631023 ARHGAP19Q14CB8 494 aa20■□□□□ 0.79
CLN3-240ENST00000631023 CCSMST1Q4G0I0 132 aa20■□□□□ 0.79
CLN3-240ENST00000631023 PIWIL4Q7Z3Z4 852 aaKnown RBP20■□□□□ 0.79
CLN3-240ENST00000631023 DTX1Q86Y01 620 aa20■□□□□ 0.79
CLN3-240ENST00000631023 MYO1HQ8N1T3 1032 aa20■□□□□ 0.79
CLN3-240ENST00000631023 C2orf73Q8N5S3 287 aaPredicted RBP20■□□□□ 0.79
CLN3-240ENST00000631023 OR8K5Q8NH50 307 aa20■□□□□ 0.79
CLN3-240ENST00000631023 VPS39Q96JC1 886 aa20■□□□□ 0.79
CLN3-240ENST00000631023 FCRL4Q96PJ5 515 aa20■□□□□ 0.79
CLN3-240ENST00000631023 FMO2Q99518 471 aa20■□□□□ 0.79
CLN3-240ENST00000631023 SMYD2Q9NRG4 433 aa20■□□□□ 0.79
CLN3-240ENST00000631023 FAM95CA0A1B0GW59 222 aa20■□□□□ 0.79
CLN3-240ENST00000631023 FAM159BA6NKW6 160 aa20■□□□□ 0.79
CLN3-240ENST00000631023 MYO1CO00159 1063 aa20■□□□□ 0.79
CLN3-240ENST00000631023 FKBP9O95302 570 aa20■□□□□ 0.79
CLN3-240ENST00000631023 C8GP07360 202 aa20■□□□□ 0.79
CLN3-240ENST00000631023 ATP1A2P50993 1020 aa20■□□□□ 0.79
CLN3-240ENST00000631023 UCNP55089 124 aa20■□□□□ 0.79
CLN3-240ENST00000631023 TLE3Q04726 772 aa20■□□□□ 0.79
CLN3-240ENST00000631023 LARP7Q4G0J3 582 aaKnown RBP eCLIP20■□□□□ 0.79
CLN3-240ENST00000631023 EEF1AKMT2Q5JPI9 291 aaKnown RBP20■□□□□ 0.79
CLN3-240ENST00000631023 UBE2R2Q712K3 238 aaPredicted RBP20■□□□□ 0.79
CLN3-240ENST00000631023 TAX1BP1Q86VP1 789 aa20■□□□□ 0.79
CLN3-240ENST00000631023 CTAGE3PQ8IX95 158 aa20■□□□□ 0.79
CLN3-240ENST00000631023 IFT20Q8IY31 132 aa20■□□□□ 0.79
CLN3-240ENST00000631023 FLVCR1-AS1Q8TAF5 88 aa20■□□□□ 0.79
CLN3-240ENST00000631023 TCTN2Q96GX1 697 aa20■□□□□ 0.79
CLN3-240ENST00000631023 ULBP3Q9BZM4 244 aa20■□□□□ 0.79
CLN3-240ENST00000631023 INTS7Q9NVH2 962 aaKnown RBP20■□□□□ 0.79
CLN3-240ENST00000631023 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20■□□□□ 0.79
CLN3-240ENST00000631023 LAMA5O15230 3695 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 CXorf49A8MYA2 514 aaPredicted RBP19.99■□□□□ 0.79
CLN3-240ENST00000631023 PIAS1O75925 651 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 STK17BO94768 372 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 PVRP15151 417 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 SAT1P21673 171 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 PEBP1P30086 187 aaKnown RBP19.99■□□□□ 0.79
CLN3-240ENST00000631023 SLC12A2P55011 1212 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 SF1Q15637 639 aaKnown RBP19.99■□□□□ 0.79
CLN3-240ENST00000631023 CYP2A13Q16696 494 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 RELL1Q8IUW5 271 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 C19orf47Q8N9M1 422 aaKnown RBP19.99■□□□□ 0.79
CLN3-240ENST00000631023 MCOLN3Q8TDD5 553 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 DENND1AQ8TEH3 1009 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 FBF1Q8TES7 1133 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 LINGO1Q96FE5 620 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 OLFM1Q99784 485 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 CHRNA10Q9GZZ6 450 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 PILRAQ9UKJ1 303 aa19.99■□□□□ 0.79
CLN3-240ENST00000631023 TMEM184BQ9Y519 407 aaPredicted RBP19.99■□□□□ 0.79
CLN3-240ENST00000631023 SYF2O95926 243 aaKnown RBP19.98■□□□□ 0.79
CLN3-240ENST00000631023 MSL3P1P0C860 447 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 CYP2A7P20853 494 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 OAS2P29728 719 aaKnown RBP19.98■□□□□ 0.79
CLN3-240ENST00000631023 PHBP35232 272 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 GP5P40197 560 aa19.98■□□□□ 0.79
CLN3-240ENST00000631023 TGIF1Q15583 401 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms