RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 FBXW11Q9UKB1 542 aa4.74□□□□□ -1.65
SMAD4-216ENST00000593223 RALYQ9UKM9 306 aaKnown RBP4.74□□□□□ -1.65
SMAD4-216ENST00000593223 ITM2BQ9Y287 266 aa4.74□□□□□ -1.65
SMAD4-216ENST00000593223 CAB39Q9Y376 341 aaPredicted RBP4.74□□□□□ -1.65
SMAD4-216ENST00000593223 CPDO75976 1380 aa4.74□□□□□ -1.65
SMAD4-216ENST00000593223 CEP290O15078 2479 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 FRMD3A2A2Y4 597 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 LILRA5A6NI73 299 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 AP3B1O00203 1094 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 CACNB4O00305 520 aaPredicted RBP4.73□□□□□ -1.65
SMAD4-216ENST00000593223 MCF2LO15068 1137 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 KCNN4O15554 427 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 PRPSAP2O60256 369 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 DAB1O75553 588 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 DDNO94850 711 aaPredicted RBP4.73□□□□□ -1.65
SMAD4-216ENST00000593223 HIST1H2ABP04908 130 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 HEXBP07686 556 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 F7P08709 466 aaPredicted RBP4.73□□□□□ -1.65
SMAD4-216ENST00000593223 MMP10P09238 476 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 POLR2CP19387 275 aaPredicted RBP4.73□□□□□ -1.65
SMAD4-216ENST00000593223 HIST1H2ADP20671 130 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 TMOD1P28289 359 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 MAPK4P31152 587 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 MTHFRP42898 656 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 IFNAR2P48551 515 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 FUT6P51993 359 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 RAD23AP54725 363 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 MC1RQ01726 317 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 GTF2H2Q13888 395 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 MORF4L2Q15014 288 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 SHROOM1Q2M3G4 852 aaPredicted RBP4.73□□□□□ -1.65
SMAD4-216ENST00000593223 CAVIN4Q5BKX8 364 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 TCP11X2Q5H9J9 407 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 FAM76BQ5HYJ3 339 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 KRBOX4Q5JUW0 171 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 GTF2H2CQ6P1K8 395 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 ANGPTL8Q6UXH0 198 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 HIST3H2AQ7L7L0 130 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 CCDC190Q86UF4 302 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 MAP7D3Q8IWC1 876 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 TTC39CQ8N584 583 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 RFLNBQ8N5W9 214 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 KCTD6Q8NC69 237 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 OR5R1Q8NH85 324 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 LNX1Q8TBB1 728 aaPredicted RBP4.73□□□□□ -1.65
SMAD4-216ENST00000593223 SLC38A5Q8WUX1 472 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 ATP6V0A1Q93050 837 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 CNDP1Q96KN2 507 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 CCDC114Q96M63 670 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 RUNDC3BQ96NL0 473 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 NUDCD1Q96RS6 583 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 SMC6Q96SB8 1091 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 SEMA3CQ99985 751 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 CRACR2AQ9BSW2 395 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 SMARCAD1Q9H4L7 1026 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 TMEM30AQ9NV96 361 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 SUCLA2Q9P2R7 463 aaPredicted RBP4.73□□□□□ -1.65
SMAD4-216ENST00000593223 PADI3Q9ULW8 664 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 PCDHGB4Q9UN71 923 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 OR2W1Q9Y3N9 320 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 ARFGEF1Q9Y6D6 1849 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 USP54Q70EL1 1684 aa4.73□□□□□ -1.65
SMAD4-216ENST00000593223 PKD1L2Q7Z442 2459 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 KIF13BQ9NQT8 1826 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 KRT87PA6NCN2 255 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PTGES3LE9PB15 166 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PRR23D1E9PI22 279 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 UBXN8O00124 270 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ANKRD28O15084 1053 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 HS6ST1O60243 411 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 SYNCRIPO60506 623 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 KRT36O76013 467 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ZNF432O94892 652 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 CSPG5O95196 566 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PGM3O95394 542 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ICAM1P05362 532 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PRR23D2P0DMB1 279 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 CETPP11597 493 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 GZMAP12544 262 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 HLA-DOBP13765 273 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ANXA7P20073 488 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 CD9P21926 228 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PBLDP30039 288 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 APOBEC1P41238 236 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 SULT1E1P49888 294 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ZNF41P51814 821 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 CDH8P55286 799 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 CLDN20P56880 219 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 SLC26A5P58743 744 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 EEF1A1P68104 462 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 COG7P83436 770 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 STK4Q13043 487 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 ZNF234Q14588 700 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 KYNUQ16719 465 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 EEF1A1P5Q5VTE0 462 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 PAPD4Q6PIY7 484 aaKnown RBP4.72□□□□□ -1.65
SMAD4-216ENST00000593223 DCLRE1AQ6PJP8 1040 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 GDPD4Q6W3E5 623 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 C9orf139Q6ZV77 190 aa4.72□□□□□ -1.65
SMAD4-216ENST00000593223 NRROSQ86YC3 692 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms