RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ATPIF1Q9UII2 106 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 MRTO4Q9UKD2 239 aaKnown RBP9.61□□□□□ -0.87
LIG3-216ENST00000593099 MMP17Q9ULZ9 603 aa9.61□□□□□ -0.87
LIG3-216ENST00000593099 KIF13BQ9NQT8 1826 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 SDC3O75056 442 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 TGDSO95455 350 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 F7P08709 466 aaPredicted RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 NT5EP21589 574 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 RRM2P31350 389 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 IRF9Q00978 393 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 HEPACAMQ14CZ8 416 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 PTCHD3Q3KNS1 767 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 THOC6Q86W42 341 aaKnown RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 ARRDC2Q8TBH0 407 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 MARK4Q96L34 752 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 FCRL3Q96P31 734 aaPredicted RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 OR52E6Q96RD3 313 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 BRINP2Q9C0B6 783 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 IL26Q9NPH9 171 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ACSS2Q9NR19 701 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ADPRHL2Q9NX46 363 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 CORO2BQ9UQ03 480 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 RUVBL1Q9Y265 456 aaKnown RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 DGKBQ9Y6T7 804 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 E7ESA3 106 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 SLC22A3O75751 556 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 S1PR4O95977 384 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 IMPDH1P20839 514 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 CPN2P22792 545 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 PPIBP23284 216 aaKnown RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 COPZ1P61923 177 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ACSBG2Q5FVE4 666 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 SAMD4BQ5PRF9 694 aaKnown RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 HSD11B1LQ7Z5J1 315 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 LUZP2Q86TE4 346 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 RIN3Q8TB24 985 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ACTRT2Q8TDY3 377 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 FIG4Q92562 907 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 EDAQ92838 391 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ITCHQ96J02 903 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 CCDC28BQ9BUN5 200 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 TRIM8Q9BZR9 551 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 C12orf65Q9H3J6 166 aaKnown RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 DDX18Q9NVP1 670 aaKnown RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 RFXANKO14593 260 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 SLC16A5O15375 505 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 NR2F1P10589 423 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 PRPS2P11908 318 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 MYCLP1P12525 358 aaPredicted RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 KIR3DL1P43629 444 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 CLDN2P57739 230 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 HERVK_113P63132 956 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ALDH6A1Q02252 535 aaKnown RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 TCTN1Q2MV58 587 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ABHD13Q7L211 337 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 PROX1Q92786 737 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ATOH1Q92858 354 aaPredicted RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 EME1Q96AY2 570 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 TRPM7Q96QT4 1865 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 MCMBPQ9BTE3 642 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ERVK-6Q9BXR3 956 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 ZNF358Q9NW07 568 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 H2AFY2Q9P0M6 372 aaPredicted RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 MARCH4Q9P2E8 410 aaPredicted RBP9.6□□□□□ -0.87
LIG3-216ENST00000593099 SESN1Q9Y6P5 492 aa9.6□□□□□ -0.87
LIG3-216ENST00000593099 MUSKO15146 869 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 BCAT2O15382 392 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 EDF1O60869 148 aaKnown RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 PIK3R1P27986 724 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ARCN1P48444 511 aaKnown RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 PGFP49763 221 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 RAB14P61106 215 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 SEMA3BQ13214 749 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 KCNC3Q14003 757 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CLEC6AQ6EIG7 209 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CD300LGQ6UXG3 332 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 MBOAT1Q6ZNC8 495 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 TMC8Q8IU68 726 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 RELL1Q8IUW5 271 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 SCUBE1Q8IWY4 988 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CDK20Q8IZL9 346 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 DTX3LQ8TDB6 740 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 HCAR2Q8TDS4 363 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 RHBDD1Q8TEB9 315 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 NRBF2Q96F24 287 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 MTERF1Q99551 399 aaKnown RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 SPATA5L1Q9BVQ7 753 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 PPM1HQ9ULR3 514 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 UBOX5O94941 541 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 DCNP07585 359 aaKnown RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 SRP54P61011 504 aaKnown RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 IL23RQ5VWK5 629 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 TRPV3Q8NET8 790 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 CLHC1Q8NHS4 586 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 SLC5A11Q8WWX8 675 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 EXOSC8Q96B26 276 aaKnown RBP9.59□□□□□ -0.87
LIG3-216ENST00000593099 HBEGFQ99075 208 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 PKMYT1Q99640 499 aa9.59□□□□□ -0.87
LIG3-216ENST00000593099 TBCDQ9BTW9 1192 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms