RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FAM131CQ96AQ9 280 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 PYCR2Q96C36 320 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 CMTM7Q96FZ5 175 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 METTL2AQ96IZ6 378 aaKnown RBP13.8□□□□□ -0.2
LIG3-205ENST00000585941 FRG2BQ96QU4 278 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 C1QTNF7Q9BXJ2 289 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 ATG10Q9H0Y0 220 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 ZNHIT2Q9UHR6 403 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 POLR3HQ9Y535 204 aaPredicted RBP13.8□□□□□ -0.2
LIG3-205ENST00000585941 ANKRD28O15084 1053 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PDYNP01213 254 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PRPS2P11908 318 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 HSD3B1P14060 373 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 HSD17B1P14061 328 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 ITPKAP23677 461 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 HSD3B2P26439 372 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PDHA2P29803 388 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 CTHP32929 405 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 SLC7A2P52569 658 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 CDK3Q00526 305 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 SFSWAPQ12872 951 aaKnown RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 BNIP2Q12982 314 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 CSTF3Q12996 717 aaKnown RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 NAE1Q13564 534 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 NUMA1Q14980 2115 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 WSCD2Q2TBF2 565 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 SGO1Q5FBB7 561 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 C10orf62Q5T681 223 aaPredicted RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 LRRTM4Q86VH4 590 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 AMZ2Q86W34 360 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 TMEM126BQ8IUX1 230 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 ZNF547Q8IVP9 402 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 DPP10Q8N608 796 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 LILRA3Q8N6C8 439 aaPredicted RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 BHLHE22Q8NFJ8 381 aaPredicted RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 DNAJC9Q8WXX5 260 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 TEX37Q96LM6 180 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 HBEGFQ99075 208 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PKP4Q99569 1192 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 TEX101Q9BY14 249 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 MUC13Q9H3R2 512 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 C8orf33Q9H7E9 229 aaPredicted RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 FARSBQ9NSD9 589 aaKnown RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 C6orf203Q9P0P8 240 aaPredicted RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 PSMD13Q9UNM6 376 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 KCNE2Q9Y6J6 123 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 A0A1W2PP55 124 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 FXYD1O00168 92 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 RNASEH2AO75792 299 aaKnown RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 SLC16A8O95907 504 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 DNTTP04053 509 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 RPN2P04844 631 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PCCBP05166 539 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 DRD1P21728 446 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 VARSP26640 1264 aaKnown RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 IMPA1P29218 277 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 CASP2P42575 452 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 BDKRB1P46663 353 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 SEC13P55735 322 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 MS4A2Q01362 244 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 HMGCS1Q01581 520 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 SGCGQ13326 291 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 TLR1Q15399 786 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 TAF11Q15544 211 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 C2orf27AQ580R0 203 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 XKR6Q5GH73 641 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 GRHL2Q6ISB3 625 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 CAPN13Q6MZZ7 669 aaPredicted RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 OXR1Q8N573 874 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 RNF148Q8N7C7 305 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PLA2G15Q8NCC3 412 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 HIPK4Q8NE63 616 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 OR9A1PQ8NGU1 263 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 RSRC1Q96IZ7 334 aaKnown RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 ACPTQ9BZG2 426 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 DPY30Q9C005 99 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 TRIM15Q9C019 465 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PHPT1Q9NRX4 125 aaPredicted RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 INTS7Q9NVH2 962 aaKnown RBP13.79□□□□□ -0.2
LIG3-205ENST00000585941 NMRK1Q9NWW6 199 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 FBXL12Q9NXK8 326 aa13.79□□□□□ -0.2
LIG3-205ENST00000585941 PRORSD1PA6NEY8 169 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 ANTXRLA6NF34 631 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 H0YIV9 168 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 KMOO15229 486 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 DNAJA2O60884 412 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 IL6P05231 212 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 POU3F3P20264 500 aaPredicted RBP13.78□□□□□ -0.2
LIG3-205ENST00000585941 ACADLP28330 430 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 TRIM23P36406 574 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 CLNS1AP54105 237 aaKnown RBP13.78□□□□□ -0.2
LIG3-205ENST00000585941 MRPS21P82921 87 aaKnown RBP13.78□□□□□ -0.2
LIG3-205ENST00000585941 E2F2Q14209 437 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 TIGD2Q4W5G0 525 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 CRTC3Q6UUV7 619 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 C11orf96Q7Z7L8 435 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 PDZD3Q86UT5 571 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 DNAJB8Q8NHS0 232 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 GANCQ8TET4 914 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 NRG4Q8WWG1 115 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms