RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 NIPSNAP2O75323 286 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 NDUFS3O75489 264 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 KLF7O75840 302 aaPredicted RBP16.78■□□□□ 0.28
SMG6-214ENST00000573827 C1orf105O95561 183 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 KLK3P07288 261 aaPredicted RBP16.78■□□□□ 0.28
SMG6-214ENST00000573827 CBSLP0DN79 551 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 NR1D1P20393 614 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 OGNP20774 298 aaKnown RBP16.78■□□□□ 0.28
SMG6-214ENST00000573827 MAGP20916 626 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 CBSP35520 551 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 TERF1P54274 439 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 EIF3BP55884 814 aaKnown RBP16.78■□□□□ 0.28
SMG6-214ENST00000573827 RPS15P62841 145 aaKnown RBP16.78■□□□□ 0.28
SMG6-214ENST00000573827 FCRL6Q6DN72 434 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 RHBDD2Q6NTF9 364 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 TCTN3Q6NUS6 607 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 CILP2Q8IUL8 1156 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 NAT8LQ8N9F0 302 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 CFAP61Q8NHU2 1237 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 HMGCLL1Q8TB92 370 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 THAP4Q8WY91 577 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 SEC14L1Q92503 715 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 PANX3Q96QZ0 392 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 OSBPL9Q96SU4 736 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 TCF12Q99081 682 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 EPN3Q9H201 632 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 MLXIPLQ9NP71 852 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 IL1RAPL1Q9NZN1 696 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 MAN2B2Q9Y2E5 1009 aa16.78■□□□□ 0.28
SMG6-214ENST00000573827 PGRMC1O00264 195 aaKnown RBP16.77■□□□□ 0.28
SMG6-214ENST00000573827 CNOT3O75175 753 aaKnown RBP16.77■□□□□ 0.28
SMG6-214ENST00000573827 RFPL1O75677 317 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 OR2B3O76000 313 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 MATN4O95460 622 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 S1PR4O95977 384 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 ESR1P03372 595 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 F7P08709 466 aaPredicted RBP16.77■□□□□ 0.28
SMG6-214ENST00000573827 ITGAXP20702 1163 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 ATP5DP30049 168 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 BDKRB1P46663 353 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 TLE1Q04724 770 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 NCF4Q15080 339 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 TMED2Q15363 201 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 ANKRD20A4Q4UJ75 823 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 LACTB2Q53H82 288 aaPredicted RBP16.77■□□□□ 0.28
SMG6-214ENST00000573827 MRNIPQ6NTE8 343 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 NEPROQ6NW34 567 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 CCDC137Q6PK04 289 aaKnown RBP16.77■□□□□ 0.28
SMG6-214ENST00000573827 TMEM151BQ8IW70 566 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 C2orf73Q8N5S3 287 aaPredicted RBP16.77■□□□□ 0.28
SMG6-214ENST00000573827 CLIP3Q96DZ5 547 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 SIGLEC10Q96LC7 697 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 ZNF285Q96NJ3 590 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 DPH2Q9BQC3 489 aaPredicted RBP16.77■□□□□ 0.28
SMG6-214ENST00000573827 SLC22A11Q9NSA0 550 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 KLK4Q9Y5K2 254 aa16.77■□□□□ 0.28
SMG6-214ENST00000573827 CCDC88CQ9P219 2028 aa16.77■□□□□ 0.27
SMG6-214ENST00000573827 DOPEY2Q9Y3R5 2298 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 A0A1W2PPV9 198 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 ISM1B1AKI9 464 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 ZNF185O15231 689 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 NRDCO43847 1150 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 PHF2O75151 1096 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 CEACAM4O75871 244 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 RPN2P04844 631 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 FMO4P31512 558 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 CASRP41180 1078 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 PTGIRP43119 386 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 CSRP3P50461 194 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 RNF187Q5TA31 235 aaPredicted RBP16.76■□□□□ 0.27
SMG6-214ENST00000573827 ZNF549Q6P9A3 640 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 OTOAQ7RTW8 1153 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 ZBTB2Q8N680 514 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 GIMAP7Q8NHV1 300 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 SLC30A3Q99726 388 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 XAB2Q9HCS7 855 aaKnown RBP16.76■□□□□ 0.27
SMG6-214ENST00000573827 EURLQ9NYK6 297 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 ANAPC2Q9UJX6 822 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 SNX12Q9UMY4 172 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 PLCL2Q9UPR0 1127 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 AP1M2Q9Y6Q5 423 aa16.76■□□□□ 0.27
SMG6-214ENST00000573827 UTP20O75691 2785 aaKnown RBP16.76■□□□□ 0.27
SMG6-214ENST00000573827 CNTRLQ7Z7A1 2325 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 SDR42E2A6NKP2 422 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 GOLGA8MH3BSY2 632 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 CES2O00748 559 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 KPNA5O15131 536 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 ZSCAN9O15535 394 aaPredicted RBP16.75■□□□□ 0.27
SMG6-214ENST00000573827 MAP3K7O43318 606 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 KDM1AO60341 852 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 ONECUT2O95948 504 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 HBQ1P09105 142 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 ERGP11308 486 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 FNTAP49354 379 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 CLCN7P51798 805 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 CHAF1BQ13112 559 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 ACSBG2Q5FVE4 666 aa16.75■□□□□ 0.27
SMG6-214ENST00000573827 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.75■□□□□ 0.27
SMG6-214ENST00000573827 PAPD7Q5XG87 772 aaKnown RBP16.75■□□□□ 0.27
SMG6-214ENST00000573827 SDCCAG8Q86SQ7 713 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms