RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 BIRC8Q96P09 236 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 TRIM56Q9BRZ2 755 aaKnown RBP17.42■□□□□ 0.38
CHD3-214ENST00000572579 KIFC1Q9BW19 673 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 SYBUQ9NX95 663 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 EURLQ9NYK6 297 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 GALPQ9UBC7 116 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 PLCL2Q9UPR0 1127 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 AP1M2Q9Y6Q5 423 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 FER1L5A0AVI2 2057 aa17.42■□□□□ 0.38
CHD3-214ENST00000572579 MAP3K7O43318 606 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 AVILO75366 819 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 MED26O95402 600 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 F7P08709 466 aaPredicted RBP17.41■□□□□ 0.38
CHD3-214ENST00000572579 AGXTP21549 392 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 MCM3P25205 808 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 OTX2P32243 289 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 CXCR5P32302 372 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 DCDP81605 110 aaKnown RBP17.41■□□□□ 0.38
CHD3-214ENST00000572579 RAPSNQ13702 412 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 NKAIN1Q4KMZ8 207 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 MRGPREQ86SM8 312 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 DENND1AQ8TEH3 1009 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 UBE2Q2Q8WVN8 375 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 TTC1Q99614 292 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 SLC7A5P2Q9GIP4 190 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 LUZP4Q9P127 313 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 MAP4K5Q9Y4K4 846 aa17.41■□□□□ 0.38
CHD3-214ENST00000572579 PRRC2CQ9Y520 2896 aaKnown RBP17.4■□□□□ 0.38
CHD3-214ENST00000572579 TTLL8A6PVC2 850 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 C1orf105O95561 183 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 HBQ1P09105 142 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 RPS3P23396 243 aaKnown RBP eCLIP17.4■□□□□ 0.38
CHD3-214ENST00000572579 NPY2RP49146 381 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 BASP1P80723 227 aaKnown RBP17.4■□□□□ 0.38
CHD3-214ENST00000572579 SSPNQ14714 243 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 TRIP13Q15645 432 aaPredicted RBP17.4■□□□□ 0.38
CHD3-214ENST00000572579 ANKRD22Q5VYY1 191 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 UNC5DQ6UXZ4 953 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 MED25Q71SY5 747 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 PPP1R32Q7Z5V6 425 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 HOOK3Q86VS8 718 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 DCUN1D3Q8IWE4 304 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 MPP5Q8N3R9 675 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 TMEM102Q8N9M5 508 aaPredicted RBP17.4■□□□□ 0.38
CHD3-214ENST00000572579 OR2L8Q8NGY9 312 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.4■□□□□ 0.38
CHD3-214ENST00000572579 ZNF285Q96NJ3 590 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 PSMG3-AS1Q96PY0 264 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 SMAD5Q99717 465 aaKnown RBP17.4■□□□□ 0.38
CHD3-214ENST00000572579 DHRS4Q9BTZ2 278 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 MFRPQ9BY79 579 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 IL22Q9GZX6 179 aa17.4■□□□□ 0.38
CHD3-214ENST00000572579 PTRH2Q9Y3E5 179 aaKnown RBP17.4■□□□□ 0.38
CHD3-214ENST00000572579 A0A1W2PPV9 198 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 C9J4A7 227 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 RASGRF2O14827 1237 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 CTSVO60911 334 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 VAPBO95292 243 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 ONECUT2O95948 504 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 APOA4P06727 396 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 GNLYP22749 145 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 PSMB5P28074 263 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 BDKRB1P46663 353 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 TTPAP49638 278 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 TERF1P54274 439 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 CCZ1BP86790 482 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 CCZ1P86791 482 aaPredicted RBP17.39■□□□□ 0.37
CHD3-214ENST00000572579 GBX1Q14549 363 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 PTRHD1Q6GMV3 140 aaKnown RBP17.39■□□□□ 0.37
CHD3-214ENST00000572579 JMJD6Q6NYC1 403 aaPredicted RBP17.39■□□□□ 0.37
CHD3-214ENST00000572579 TTC27Q6P3X3 843 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 TLDC1Q6P9B6 456 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 LRRC8BQ6P9F7 803 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 FIGLAQ6QHK4 219 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 COX15Q7KZN9 410 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 OR2Y1Q8NGV0 311 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 CPT1CQ8TCG5 803 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 PROKR1Q8TCW9 393 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 LPGAT1Q92604 370 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 N4BP2L2Q92802 583 aaPredicted RBP17.39■□□□□ 0.37
CHD3-214ENST00000572579 SYNPO2LQ9H987 977 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 ENAMQ9NRM1 1142 aa17.39■□□□□ 0.37
CHD3-214ENST00000572579 IFT80Q9P2H3 777 aaPredicted RBP17.39■□□□□ 0.37
CHD3-214ENST00000572579 TTC7AQ9ULT0 858 aaPredicted RBP17.39■□□□□ 0.37
CHD3-214ENST00000572579 UTP20O75691 2785 aaKnown RBP17.39■□□□□ 0.37
CHD3-214ENST00000572579 SNRNP200O75643 2136 aaKnown RBP17.38■□□□□ 0.37
CHD3-214ENST00000572579 RP1L1Q8IWN7 2480 aaPredicted RBP17.38■□□□□ 0.37
CHD3-214ENST00000572579 CEP104O60308 925 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 FMO4P31512 558 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 FASTKQ14296 549 aaKnown RBP17.38■□□□□ 0.37
CHD3-214ENST00000572579 KCNJ11Q14654 390 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 AARS2Q5JTZ9 985 aaKnown RBP17.38■□□□□ 0.37
CHD3-214ENST00000572579 SLC6A19Q695T7 634 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 CAND1Q86VP6 1230 aaKnown RBP17.38■□□□□ 0.37
CHD3-214ENST00000572579 LRRC8AQ8IWT6 810 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 AGGF1Q8N302 714 aaeCLIP17.38■□□□□ 0.37
CHD3-214ENST00000572579 FAM26EQ8N5C1 309 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 FAM136AQ96C01 138 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 MESP1Q9BRJ9 268 aa17.38■□□□□ 0.37
CHD3-214ENST00000572579 ZBTB20Q9HC78 741 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms