RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	PKLR	P30613	574 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	RORA	P35398	523 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	CCNF	P41002	786 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	RAB28	P51157	221 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	ADAR	P55265	1226 aa	Known RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	NFKB2	Q00653	900 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	DMTN	Q08495	405 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	THOC5	Q13769	683 aa	Known RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	DHX34	Q14147	1143 aa	Known RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZIC1	Q15915	447 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	UGT8	Q16880	541 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	TYSND1	Q2T9J0	566 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	ANKRD20A4	Q4UJ75	823 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZNF789	Q5FWF6	425 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	CTSL3P	Q5NE16	218 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	RNF187	Q5TA31	235 aa	Predicted RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	ANKRD22	Q5VYY1	191 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	KIAA0930	Q6ICG6	404 aa	Predicted RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	LCN10	Q6JVE6	187 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	SYVN1	Q86TM6	617 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	TMEM135	Q86UB9	458 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	CILP2	Q8IUL8	1156 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	DCUN1D3	Q8IWE4	304 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	PPIL6	Q8IXY8	311 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	DNAJC22	Q8N4W6	341 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	C2orf73	Q8N5S3	287 aa	Predicted RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	OR2L8	Q8NGY9	312 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	THAP4	Q8WY91	577 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	LPGAT1	Q92604	370 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	COL26A1	Q96A83	441 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	RAD51AP1	Q96B01	352 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	ABHD17A	Q96GS6	310 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	FOPNL	Q96NB1	174 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	RUFY1	Q96T51	708 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	NLN	Q9BYT8	704 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	SPRTN	Q9H040	489 aa	Predicted RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZNF71	Q9NQZ8	489 aa	Predicted RBP	6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	PYCARD	Q9ULZ3	195 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	SNX12	Q9UMY4	172 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	PLCL2	Q9UPR0	1127 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	VPS9D1	Q9Y2B5	631 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	MAN2B2	Q9Y2E5	1009 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	MRFAP1	Q9Y605	127 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	DOPEY2	Q9Y3R5	2298 aa		6.67	□□□□□ -1.34
SF3B3-209	ENST00000567635	NUP210L	Q5VU65	1888 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	SMG1	Q96Q15	3661 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	CTAGE9	A4FU28	777 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	C2orf72	A6NCS6	295 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	TARM1	B6A8C7	271 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635		E5RI56	91 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZNF185	O15231	689 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	HCRTR1	O43613	425 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PRICKLE3	O43900	615 aa	Predicted RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PHF2	O75151	1096 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	NIPSNAP2	O75323	286 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	RFPL1	O75677	317 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	TMEM63A	O94886	807 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	MATN4	O95460	622 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	C1orf105	O95561	183 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	CD63	P08962	238 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PKM	P14618	531 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	ATP5D	P30049	168 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PEBP1	P30086	187 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	GABRA4	P48169	554 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	FNTA	P49354	379 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PMS2	P54278	862 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	RPS18	P62269	152 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	GRB7	Q14451	532 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PPP1R7	Q15435	360 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	SF1	Q15637	639 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	LONRF1	Q17RB8	773 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PTCHD3	Q3KNS1	767 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	LACTB2	Q53H82	288 aa	Predicted RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZC3H12B	Q5HYM0	836 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	TCTN3	Q6NUS6	607 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	TLDC1	Q6P9B6	456 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	FIGLA	Q6QHK4	219 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	CENPU	Q71F23	418 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PTRH1	Q86Y79	214 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZGRF1	Q86YA3	2104 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	MCAT	Q8IVS2	390 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	APLF	Q8IW19	511 aa	Predicted RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	FAM20C	Q8IXL6	584 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	SYTL1	Q8IYJ3	562 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	RAB42	Q8N4Z0	105 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	NAT8L	Q8N9F0	302 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	LMNTD1	Q8N9Z9	388 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	LINC01555	Q8NAE3	123 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	MAGEC3	Q8TD91	643 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZUFSP	Q96AP4	578 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	ZNF669	Q96BR6	464 aa	Predicted RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	SIGLEC10	Q96LC7	697 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	SERPINB12	Q96P63	405 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	IL17F	Q96PD4	163 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	NDC1	Q9BTX1	674 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	MENT	Q9BUN1	341 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	RAB11FIP5	Q9BXF6	653 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	PCMTD2	Q9NV79	361 aa		6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	INTS7	Q9NVH2	962 aa	Known RBP	6.66	□□□□□ -1.34
SF3B3-209	ENST00000567635	INTS10	Q9NVR2	710 aa	Known RBP	6.66	□□□□□ -1.34

Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms