RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 FAM136AQ96C01 138 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 DPH2Q9BQC3 489 aaPredicted RBP19.98■□□□□ 0.79
CLN3-219ENST00000565778 TRIM56Q9BRZ2 755 aaKnown RBP19.98■□□□□ 0.79
CLN3-219ENST00000565778 XAB2Q9HCS7 855 aaKnown RBP19.98■□□□□ 0.79
CLN3-219ENST00000565778 TCFL5Q9UL49 500 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 PLCL2Q9UPR0 1127 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 TP53TG5Q9Y2B4 290 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 NFS1Q9Y697 457 aa19.98■□□□□ 0.79
CLN3-219ENST00000565778 HELZ2Q9BYK8 2649 aaKnown RBP19.98■□□□□ 0.79
CLN3-219ENST00000565778 GOLGA6L10A0A0M3HER8 536 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 FAM237BA0A1B0GVD1 139 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 C9J4A7 227 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 RASGRF2O14827 1237 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 NIPSNAP2O75323 286 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 C1orf105O95561 183 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 S1PR4O95977 384 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 ESR1P03372 595 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 MAGP20916 626 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 GABRA4P48169 554 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 IL10RAQ13651 578 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 THOC5Q13769 683 aaKnown RBP19.97■□□□□ 0.79
CLN3-219ENST00000565778 C1orf189Q5VU69 101 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 MLIPQ5VWP3 458 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 APLFQ8IW19 511 aaPredicted RBP19.97■□□□□ 0.79
CLN3-219ENST00000565778 RAB42Q8N4Z0 105 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 ZNF655Q8N720 491 aaPredicted RBP19.97■□□□□ 0.79
CLN3-219ENST00000565778 MAGEC3Q8TD91 643 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 ZNF669Q96BR6 464 aaPredicted RBP19.97■□□□□ 0.79
CLN3-219ENST00000565778 MENTQ9BUN1 341 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 IL1RAPL1Q9NZN1 696 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 TSR3Q9UJK0 312 aaKnown RBP19.97■□□□□ 0.79
CLN3-219ENST00000565778 ANAPC2Q9UJX6 822 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 RUVBL2Q9Y230 463 aaKnown RBP19.97■□□□□ 0.79
CLN3-219ENST00000565778 NEU2Q9Y3R4 380 aa19.97■□□□□ 0.79
CLN3-219ENST00000565778 CTAGE9A4FU28 777 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 E5RI56 91 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 ZNF185O15231 689 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 PHF2O75151 1096 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 CAPN1P07384 714 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 CTSBP07858 339 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 CBSLP0DN79 551 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 PKMP14618 531 aaKnown RBP19.96■□□□□ 0.79
CLN3-219ENST00000565778 NR1D1P20393 614 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 OGNP20774 298 aaKnown RBP19.96■□□□□ 0.79
CLN3-219ENST00000565778 CBSP35520 551 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 BDKRB1P46663 353 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 CCL11P51671 97 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 FAM69BQ5VUD6 431 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 TCTN3Q6NUS6 607 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 TLDC1Q6P9B6 456 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 CNSTQ6PJW8 725 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 CENPUQ71F23 418 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 CILP2Q8IUL8 1156 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 MCATQ8IVS2 390 aaKnown RBP19.96■□□□□ 0.79
CLN3-219ENST00000565778 SERPINB12Q96P63 405 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 RAB11FIP5Q9BXF6 653 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 ACSS2Q9NR19 701 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 TXLNGQ9NUQ3 528 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 INTS7Q9NVH2 962 aaKnown RBP19.96■□□□□ 0.79
CLN3-219ENST00000565778 GPN3Q9UHW5 284 aaPredicted RBP19.96■□□□□ 0.79
CLN3-219ENST00000565778 SNX12Q9UMY4 172 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 VPS9D1Q9Y2B5 631 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 MAD1L1Q9Y6D9 718 aa19.96■□□□□ 0.79
CLN3-219ENST00000565778 ARGFXA6NJG6 315 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 H3BMH7 237 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 ZSCAN9O15535 394 aaPredicted RBP19.95■□□□□ 0.78
CLN3-219ENST00000565778 DNAJB5O75953 348 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 CCNFP41002 786 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 GRIA3P42263 894 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 CSRP3P50461 194 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 ADARP55265 1226 aaKnown RBP19.95■□□□□ 0.78
CLN3-219ENST00000565778 TLE1Q04724 770 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 PPP1R7Q15435 360 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 CCSMST1Q4G0I0 132 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 RHBDD2Q6NTF9 364 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 FIGLAQ6QHK4 219 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 ASB18Q6ZVZ8 466 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 TEX19Q8NA77 164 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 C17orf62Q9BQA9 187 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 NDC1Q9BTX1 674 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 TRIM55Q9BYV6 548 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 ING2Q9H160 280 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 CLMPQ9H6B4 373 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 INTS10Q9NVR2 710 aaKnown RBP19.95■□□□□ 0.78
CLN3-219ENST00000565778 EURLQ9NYK6 297 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 GALPQ9UBC7 116 aa19.95■□□□□ 0.78
CLN3-219ENST00000565778 DHCR7Q9UBM7 475 aaKnown RBP19.95■□□□□ 0.78
CLN3-219ENST00000565778 K7EM74 188 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 ALAS2P22557 587 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 FNTAP49354 379 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 DCDP81605 110 aaKnown RBP19.94■□□□□ 0.78
CLN3-219ENST00000565778 CHAF1BQ13112 559 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 CTBP1Q13363 440 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 NCF4Q15080 339 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 ZC3H12BQ5HYM0 836 aaKnown RBP19.94■□□□□ 0.78
CLN3-219ENST00000565778 ZNF470Q6ECI4 717 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 FAM198BQ6UWH4 519 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 PPIL6Q8IXY8 311 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 ZBTB2Q8N680 514 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 NAT8LQ8N9F0 302 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms