RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 RING1Q06587 406 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 ARHGEF7Q14155 803 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 RNF219Q5W0B1 726 aaPredicted RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 PAGE2Q7Z2X7 111 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 ZNF551Q7Z340 670 aaPredicted RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 RTN4RL1Q86UN2 441 aaPredicted RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 SERPINA9Q86WD7 417 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 PAF1Q8N7H5 531 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 SLC35B4Q969S0 331 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 SH3GL1Q99961 368 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 GPR62Q9BZJ7 368 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 LATS2Q9NRM7 1088 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 VPS4AQ9UN37 437 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 UPK3BL1B0FP48 263 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 UPK3BL2E5RIL1 263 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 SLC22A1O15245 554 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 RETP07949 1114 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 GBX1Q14549 363 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 CLCA4Q14CN2 919 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 DGUOKQ16854 277 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 RASAL3Q86YV0 1011 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 HIPK1Q86Z02 1210 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 PSMA8Q8TAA3 256 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 KLHL25Q9H0H3 589 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 PARVBQ9HBI1 364 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 HCSTQ9UBK5 93 aa12.9□□□□□ -0.35
CLN3-210ENST00000563874 HTR3EA5X5Y0 456 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 NBNO60934 754 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 PRAMEF1O95521 474 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 HOXD12P35452 270 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 SLC35A2P78381 396 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 SEMG2Q02383 582 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 VTCN1Q7Z7D3 282 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 SLC22A16Q86VW1 577 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 VMP1Q96GC9 406 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 EGLN2Q96KS0 407 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 FAM126AQ9BYI3 521 aaPredicted RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 CD244Q9BZW8 370 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 SERHLQ9NQF3 203 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 GPRC5BQ9NZH0 403 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 IL17CQ9P0M4 197 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 AFF4Q9UHB7 1163 aaKnown RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 FCF1Q9Y324 198 aaKnown RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 GMPPBQ9Y5P6 360 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 TRBV5-3A0A0A0MS03 114 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 MTMR11A4FU01 709 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 A8MU76 341 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 MANBAO00462 879 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 KLKB1P03952 638 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 LCKP06239 509 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 TGM1P22735 817 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 CDH4P55283 916 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 ARF5P84085 180 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 CACNG1Q06432 222 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 SLC13A2Q13183 592 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 ZNF177Q13360 481 aaPredicted RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 USP39Q53GS9 565 aaKnown RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 DOK6Q6PKX4 331 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 FAM193BQ96PV7 902 aaPredicted RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 CPPED1Q9BRF8 314 aaPredicted RBP12.89□□□□□ -0.35
CLN3-210ENST00000563874 ACPTQ9BZG2 426 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 TM6SF2Q9BZW4 377 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 TMEM98Q9Y2Y6 226 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 TRPM7Q96QT4 1865 aa12.89□□□□□ -0.35
CLN3-210ENST00000563874 NT5C1B-RDH14C9J2C7 533 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 RECQL5O94762 991 aaPredicted RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 VNN2O95498 520 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 S100A3P33764 101 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 DSC1Q08554 894 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 MAD2L1Q13257 205 aaPredicted RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 TAF1CQ15572 869 aaPredicted RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 SYT16Q17RD7 645 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 TMEM53Q6P2H8 277 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 AHSA2Q719I0 299 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 GLB1L3Q8NCI6 653 aaPredicted RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 OR6Q1Q8NGQ2 317 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 S100ZQ8WXG8 99 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 ITPKCQ96DU7 683 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 YIPF6Q96EC8 236 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 ZNF300Q96RE9 604 aaPredicted RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 ASPSCR1Q9BZE9 553 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 ASB8Q9H765 288 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 PDP1Q9P0J1 537 aaPredicted RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 ZNF229Q9UJW7 825 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 KRT87PA6NCN2 255 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 SLC28A1O00337 649 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 FAM20BO75063 409 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 SEC24AO95486 1093 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 CD160O95971 181 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 GLUD1P00367 558 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 ASGR1P07306 291 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 EFNA1P20827 205 aaPredicted RBP12.88□□□□□ -0.35
CLN3-210ENST00000563874 CD9P21926 228 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 MAGEA11P43364 429 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 SLC11A2P49281 568 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 GZMMP51124 257 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 DYNC2LI1Q8TCX1 351 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 HTRA1Q92743 480 aa12.88□□□□□ -0.35
CLN3-210ENST00000563874 PYCR2Q96C36 320 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms