RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 C5AR2Q9P296 337 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 G3BP2Q9UN86 482 aaKnown RBP16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 MAP4K5Q9Y4K4 846 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 NAV2Q8IVL1 2488 aa16.57■□□□□ 0.24
VPS9D1-203ENST00000563798 TTLL8A6PVC2 850 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 RASGRF2O14827 1237 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 PRICKLE3O43900 615 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 DPM1O60762 260 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 IGHEP01854 428 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 CTSBP07858 339 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 MAGP20916 626 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 CSE1LP55060 971 aaKnown RBP16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 SOX8P57073 446 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 CDK16Q00536 496 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 ATP1A4Q13733 1029 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 TMED2Q15363 201 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 MRGPREQ86SM8 312 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 LDB1Q86U70 411 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 ZNF655Q8N720 491 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 HMGCLL1Q8TB92 370 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 DENND1AQ8TEH3 1009 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 ZNF285Q96NJ3 590 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 RAB11FIP5Q9BXF6 653 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 BFARQ9NZS9 450 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 KLK4Q9Y5K2 254 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 MRFAP1Q9Y605 127 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 FER1L5A0AVI2 2057 aa16.56■□□□□ 0.24
VPS9D1-203ENST00000563798 TNRC6AQ8NDV7 1962 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 CNOT3O75175 753 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 TPSB2P20231 275 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 ARNTP27540 789 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 SESN2P58004 480 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 TPSAB1Q15661 275 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 NKAIN1Q4KMZ8 207 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 YOD1Q5VVQ6 348 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 MLIPQ5VWP3 458 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 LRRC8BQ6P9F7 803 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 MCATQ8IVS2 390 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 KRT222Q8N1A0 295 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 CPT1CQ8TCG5 803 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 DLG3Q92796 817 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 RAD51AP1Q96B01 352 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 PTERQ96BW5 349 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 FER1L6-AS2Q96M78 137 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 NDC1Q9BTX1 674 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 SLC22A11Q9NSA0 550 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 HOMER3Q9NSC5 361 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 INTS7Q9NVH2 962 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 GPR83Q9NYM4 423 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 IFT80Q9P2H3 777 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 DHCR7Q9UBM7 475 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 GPN3Q9UHW5 284 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 GNPTGQ9UJJ9 305 aa16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 PTRH2Q9Y3E5 179 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-203ENST00000563798 DOPEY2Q9Y3R5 2298 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 TARM1B6A8C7 271 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 ZNF185O15231 689 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 KLHL41O60662 606 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 FGGP02679 453 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 NMBRP28336 390 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 FOLR3P41439 243 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 MAGEA6P43360 314 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 ARSFP54793 590 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 ADARP55265 1226 aaKnown RBP16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 CRADDP78560 199 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 GBX1Q14549 363 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 DCAF10Q5QP82 559 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 C1orf189Q5VU69 101 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 FCRL6Q6DN72 434 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 PTRHD1Q6GMV3 140 aaKnown RBP16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 JMJD6Q6NYC1 403 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 EFCAB3Q8N7B9 438 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 RBMXL3Q8N7X1 1067 aaKnown RBP16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 LMNTD1Q8N9Z9 388 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 PNPLA2Q96AD5 504 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 ZUFSPQ96AP4 578 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 FKBP10Q96AY3 582 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 BIRC8Q96P09 236 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 TCF12Q99081 682 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 TXLNGQ9NUQ3 528 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 NDOR1Q9UHB4 597 aa16.54■□□□□ 0.24
VPS9D1-203ENST00000563798 USP9XQ93008 2570 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 VPS4BO75351 444 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 NDUFS3O75489 264 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 SNRNP200O75643 2136 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 C1orf105O95561 183 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 ALBP02768 609 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 UMODP07911 640 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 CCDC175P0C221 793 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 VARSP26640 1264 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 ATP5DP30049 168 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 OTX2P32243 289 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 CCNFP41002 786 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 BASP1P80723 227 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 TYSND1Q2T9J0 566 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 ZC3H12BQ5HYM0 836 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 TCTE1Q5JU00 501 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 VWA5B1Q5TIE3 1220 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 TTC23LQ6PF05 361 aa16.53■□□□□ 0.24
VPS9D1-203ENST00000563798 FIGLAQ6QHK4 219 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms