RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 KIRREL2Q6UWL6 708 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 COX15Q7KZN9 410 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 SLC22A15Q8IZD6 547 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 ELMO1Q92556 727 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 ALG3Q92685 438 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 LRRC45Q96CN5 670 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 TRIM56Q9BRZ2 755 aaKnown RBP15.78■□□□□ 0.12
CLN3-208ENST00000561505 MAP10Q9P2G4 905 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 NOVA2Q9UNW9 492 aaKnown RBP15.78■□□□□ 0.12
CLN3-208ENST00000561505 HS3ST3B1Q9Y662 390 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 A0A1B0GX78 115 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 RCCD1A6NED2 376 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 KDM1AO60341 852 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 TJP3O95049 919 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 FKBP9O95302 570 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 EDN3P14138 238 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 TPH1P17752 444 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 MAGP20916 626 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 MSNP26038 577 aaKnown RBP15.77■□□□□ 0.12
CLN3-208ENST00000561505 RAB28P51157 221 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 ELOAQ14241 798 aaKnown RBP15.77■□□□□ 0.12
CLN3-208ENST00000561505 CYP2A13Q16696 494 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 CCDC181Q5TID7 509 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 MCATQ8IVS2 390 aaKnown RBP15.77■□□□□ 0.12
CLN3-208ENST00000561505 FAR1Q8WVX9 515 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 SLC22A18Q96BI1 424 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 FAM118BQ9BPY3 351 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 SLX1AQ9BQ83 275 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 MRM3Q9HC36 420 aaKnown RBP15.77■□□□□ 0.12
CLN3-208ENST00000561505 IL1RAPL1Q9NZN1 696 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 FBXL4Q9UKA2 621 aa15.77■□□□□ 0.12
CLN3-208ENST00000561505 A0A1W2PQ72 361 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 DSCR3O14972 297 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 PSMD3O43242 534 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 STSP08842 583 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 OR56A5P0C7T3 313 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 PIM1P11309 404 aaPredicted RBP15.76■□□□□ 0.11
CLN3-208ENST00000561505 GLRBP48167 497 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 RWDD2BP57060 319 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 KLF1Q13351 362 aaPredicted RBP15.76■□□□□ 0.11
CLN3-208ENST00000561505 POU6F1Q14863 301 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 SLC9A5Q14940 896 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 AGAP7PQ5VUJ5 663 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 ZNF324BQ6AW86 544 aaPredicted RBP15.76■□□□□ 0.11
CLN3-208ENST00000561505 FCRL6Q6DN72 434 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 LRRC57Q8N9N7 239 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 OR13J1Q8NGT2 312 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 SLC35B2Q8TB61 432 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 AGAP4Q96P64 663 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 LMF1Q96S06 567 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 CARD6Q9BX69 1037 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 NXT1Q9UKK6 140 aaKnown RBP15.76■□□□□ 0.11
CLN3-208ENST00000561505 ENTPD4Q9Y227 616 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 OTOGQ6ZRI0 2925 aa15.76■□□□□ 0.11
CLN3-208ENST00000561505 CCDC162PA2VCL2 907 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 ISM1B1AKI9 464 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 TARM1B6A8C7 271 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 SLCO2B1O94956 709 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 S1PR4O95977 384 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 CD9P21926 228 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 CCR7P32248 378 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 Q0VFX4 171 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 ZRSR2Q15696 482 aaKnown RBP15.75■□□□□ 0.11
CLN3-208ENST00000561505 HIF1AQ16665 826 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 TCTE1Q5JU00 501 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 AADACL2Q6P093 401 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 TTLL10Q6ZVT0 673 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 LINC00523Q86TU6 105 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 OR11G2Q8NGC1 345 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 OR2L8Q8NGY9 312 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 HMGCLL1Q8TB92 370 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 GRHL3Q8TE85 626 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 ZUFSPQ96AP4 578 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 LHPPQ9H008 270 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 SEMA3GQ9NS98 782 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 PLAGL1Q9UM63 463 aa15.75■□□□□ 0.11
CLN3-208ENST00000561505 TDRKHQ9Y2W6 561 aaKnown RBP15.75■□□□□ 0.11
CLN3-208ENST00000561505 CNTRLQ7Z7A1 2325 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 TEP1Q99973 2627 aaKnown RBP15.74■□□□□ 0.11
CLN3-208ENST00000561505 CROCCQ5TZA2 2017 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 OR51F1A6NGY5 319 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 ERI2A8K979 691 aaKnown RBP15.74■□□□□ 0.11
CLN3-208ENST00000561505 OR1I1O60431 355 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 SRPX2O60687 465 aaPredicted RBP15.74■□□□□ 0.11
CLN3-208ENST00000561505 SUN1O94901 812 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 ITGA3P26006 1051 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 TNFRSF8P28908 595 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 ZNF169Q14929 603 aaPredicted RBP15.74■□□□□ 0.11
CLN3-208ENST00000561505 BRD3Q15059 726 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 P3H1Q32P28 736 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 ZC3H12BQ5HYM0 836 aaKnown RBP15.74■□□□□ 0.11
CLN3-208ENST00000561505 UNC5DQ6UXZ4 953 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 NAPRTQ6XQN6 538 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 ARHGEF18Q6ZSZ5 1173 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 ZNF534Q76KX8 674 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 VRK3Q8IV63 474 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 FAM20CQ8IXL6 584 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 FAM71DQ8N9W8 422 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 LMNTD1Q8N9Z9 388 aa15.74■□□□□ 0.11
CLN3-208ENST00000561505 DNAJB14Q8TBM8 379 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms