RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RALGPS1Q5JS13 557 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 KLHL35Q6PF15 583 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 GK5Q6ZS86 529 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 THOC6Q86W42 341 aaKnown RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SLC22A15Q8IZD6 547 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CLYBLQ8N0X4 340 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 FBXO15Q8NCQ5 510 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OR4F6Q8NGB9 312 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 OR9I1Q8NGQ6 314 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ZDHHC1Q8WTX9 485 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SEC14L1Q92503 715 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 EDAQ92838 391 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PMEPA1Q969W9 287 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 MRGPRX3Q96LB0 322 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 DPH7Q9BTV6 452 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 TRIM8Q9BZR9 551 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 NMUR2Q9GZQ4 415 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CD248Q9HCU0 757 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 NMRK1Q9NWW6 199 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ZDHHC2Q9UIJ5 367 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF180Q9UJW8 692 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ADAMTS6Q9UKP5 1117 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 MAU2Q9Y6X3 613 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CACNA1BQ00975 2339 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 COL6A6A6NMZ7 2263 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 MYO1GB0I1T2 1018 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 K7EPI3 171 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 BTN3A3O00478 584 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ADAM23O75077 832 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 MLYCDO95822 493 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PROCP04070 461 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 LBPP18428 481 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 IL1RNP18510 177 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 FCARP24071 287 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CMPK1P30085 196 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 S100A3P33764 101 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 MAGEA9P43362 315 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 RNF144AP50876 292 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 COPAP53621 1224 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 LCP2Q13094 533 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SPIDRQ14159 915 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 TOMM20Q15388 145 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CCNYL2Q5T2Q4 361 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 KIAA1161Q6NSJ0 714 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF549Q6P9A3 640 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 GKN2Q86XP6 184 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 RASGRP3Q8IV61 690 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SFTPA2Q8IWL1 248 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 DEFB107AQ8IZN7 70 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 CD200R1Q8TD46 325 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 FRS2Q8WU20 508 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 VPS33AQ96AX1 596 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 NSMCE3Q96MG7 304 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PPM1MQ96MI6 270 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 FCRL4Q96PJ5 515 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 NPAS2Q99743 824 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 C17orf62Q9BQA9 187 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 BRINP2Q9C0B6 783 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PHACTR1Q9C0D0 580 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 EPB41L4BQ9H329 900 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SCHIP1Q9P0W5 487 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-209ENST00000560637 C5AR2Q9P296 337 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 RAP2CQ9Y3L5 183 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 SZT2Q5T011 3432 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 VCANP13611 3396 aa5.3□□□□□ -1.56
VPS13C-209ENST00000560637 PRR5-ARHGAP8B1AHC4 643 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SERPINI2O75830 405 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF682O95780 498 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ANXA4P09525 319 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ARNTP27540 789 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 TBPL1P62380 186 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 NFKB2Q00653 900 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 HSPB3Q12988 150 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PWP1Q13610 501 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PPP1R3AQ16821 1122 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 DEFB134Q4QY38 66 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM259Q4ZIN3 620 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CATSPEREQ5SY80 951 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 AGBL4Q5VU57 503 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 KIAA0895LQ68EN5 471 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ZYG11AQ6WRX3 759 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 LONP2Q86WA8 852 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM132CQ8N3T6 1108 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 RCBTB1Q8NDN9 531 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 MAPK15Q8TD08 544 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 DNASE1L2Q92874 299 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 EID2BQ96D98 161 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SPDL1Q96EA4 605 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 C19orf60Q96EN9 201 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SEPHS2Q99611 448 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 YIPF4Q9BSR8 244 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CNPPD1Q9BV87 410 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 MYLK2Q9H1R3 596 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 RSPH9Q9H1X1 276 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 TREX1Q9NSU2 369 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 AHSPQ9NZD4 102 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 MARK1Q9P0L2 795 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SLC23A2Q9UGH3 650 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 RRP15Q9Y3B9 282 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ARID2Q68CP9 1835 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms