RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 PEX13Q92968 403 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 TCTN2Q96GX1 697 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 GBP5Q96PP8 586 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 ING2Q9H160 280 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 SLC22A11Q9NSA0 550 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 CRYL1Q9Y2S2 319 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 NDUFS3O75489 264 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 MED26O95402 600 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 C1orf105O95561 183 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 APOA4P06727 396 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 CD9P21926 228 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 RPS3P23396 243 aaKnown RBP eCLIP17.06■□□□□ 0.32
HDDC3-205ENST00000559898 GCGRP47871 477 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 TTPAP49638 278 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 FOXK1P85037 733 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 PLOD1Q02809 727 aaPredicted RBP17.06■□□□□ 0.32
HDDC3-205ENST00000559898 SRSF1Q07955 248 aaKnown RBP eCLIP17.06■□□□□ 0.32
HDDC3-205ENST00000559898 RAPSNQ13702 412 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 FASTKQ14296 549 aaKnown RBP17.06■□□□□ 0.32
HDDC3-205ENST00000559898 KIR2DS3Q14952 304 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 NCF4Q15080 339 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 NADK2Q4G0N4 442 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 MLIPQ5VWP3 458 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 CNSTQ6PJW8 725 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 HOOK3Q86VS8 718 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 DCUN1D3Q8IWE4 304 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.06■□□□□ 0.32
HDDC3-205ENST00000559898 TTC1Q99614 292 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 SLC7A5P2Q9GIP4 190 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 SYNPO2LQ9H987 977 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 MRM3Q9HC36 420 aaKnown RBP17.06■□□□□ 0.32
HDDC3-205ENST00000559898 SYTL2Q9HCH5 934 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 ANAPC2Q9UJX6 822 aa17.06■□□□□ 0.32
HDDC3-205ENST00000559898 A0A1W2PPV9 198 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 A6NL46 340 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 RASGRF2O14827 1237 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 ZNF185O15231 689 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 KLRB1Q12918 225 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 TYSND1Q2T9J0 566 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 AARS2Q5JTZ9 985 aaKnown RBP17.05■□□□□ 0.32
HDDC3-205ENST00000559898 RHBDD2Q6NTF9 364 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 UNC5DQ6UXZ4 953 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 SLC35F6Q8N357 371 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 FDCSPQ8NFU4 85 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 OR2L8Q8NGY9 312 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 UBE2Q2Q8WVN8 375 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 MAIP1Q8WWC4 291 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 THAP4Q8WY91 577 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 N4BP2L2Q92802 583 aaPredicted RBP17.05■□□□□ 0.32
HDDC3-205ENST00000559898 MAGOHBQ96A72 148 aaKnown RBP17.05■□□□□ 0.32
HDDC3-205ENST00000559898 NUDT9Q9BW91 350 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 KCNF1Q9H3M0 494 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 EURLQ9NYK6 297 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 LUZP4Q9P127 313 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 STOX2Q9P2F5 926 aaPredicted RBP17.05■□□□□ 0.32
HDDC3-205ENST00000559898 GNPTGQ9UJJ9 305 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 ANKRD12Q6UB98 2062 aa17.05■□□□□ 0.32
HDDC3-205ENST00000559898 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-205ENST00000559898 ZSCAN9O15535 394 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-205ENST00000559898 CTSVO60911 334 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 OTX2P32243 289 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 COILP38432 576 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-205ENST00000559898 MAGEA6P43360 314 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 GBX1Q14549 363 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 ACSBG2Q5FVE4 666 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.04■□□□□ 0.32
HDDC3-205ENST00000559898 ZNF549Q6P9A3 640 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 FIGLAQ6QHK4 219 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 C4orf22Q6V702 233 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 MCATQ8IVS2 390 aaKnown RBP17.04■□□□□ 0.32
HDDC3-205ENST00000559898 DENND6AQ8IWF6 608 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 GPR135Q8IZ08 494 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 GIMAP7Q8NHV1 300 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 SKA2Q8WVK7 121 aaPredicted RBP17.04■□□□□ 0.32
HDDC3-205ENST00000559898 MESP1Q9BRJ9 268 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 CHRNA10Q9GZZ6 450 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 MLXIPLQ9NP71 852 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 ACSS2Q9NR19 701 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 PLCL2Q9UPR0 1127 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 MED16Q9Y2X0 877 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 NBASA2RRP1 2371 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 PCM1Q15154 2024 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 FLNCQ14315 2725 aa17.04■□□□□ 0.32
HDDC3-205ENST00000559898 NUP210LQ5VU65 1888 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 ZCWPW2A0A1B0GU75 182 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 ALOX12BO75342 701 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 BANF1O75531 89 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 PPARGP37231 505 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-205ENST00000559898 CTBP1Q13363 440 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 TMED2Q15363 201 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 ANKRD20A4Q4UJ75 823 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 PRR30Q53SZ7 412 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-205ENST00000559898 KIAA0930Q6ICG6 404 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-205ENST00000559898 FRMPD2BQ6IN97 320 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 OTOAQ7RTW8 1153 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 METTL27Q8N6F8 245 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-205ENST00000559898 TEX19Q8NA77 164 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 ZNF669Q96BR6 464 aaPredicted RBP17.03■□□□□ 0.32
HDDC3-205ENST00000559898 SERPINB12Q96P63 405 aa17.03■□□□□ 0.32
HDDC3-205ENST00000559898 MIPEPQ99797 713 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms