RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 SNX6Q9UNH7 406 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 TCRBV21S2A2A0A5A6 115 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 BBIP1A8MTZ0 92 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 C10orf142B7Z368 130 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 NPIPB8E9PQR5 432 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 KCNJ13O60928 360 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 CEACAM5P06731 702 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 JUPP14923 745 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 GABRG2P18507 467 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 CD72P21854 359 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 CASP2P42575 452 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 TPMTP51580 245 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 MTTPP55157 894 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 ZNF33BQ06732 778 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 CHIT1Q13231 466 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 LRP8Q14114 963 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 E2F2Q14209 437 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 KPNB1Q14974 876 aaKnown RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 CPSF6Q16630 551 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP3-213ENST00000559711 TRMT5Q32P41 509 aaKnown RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 BLOC1S3Q6QNY0 202 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 KIAA1324Q6UXG2 1013 aaKnown RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 HACD2Q6Y1H2 254 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 TRIM69Q86WT6 500 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 MYLK4Q86YV6 388 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 LRRC56Q8IYG6 542 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 FBXW8Q8N3Y1 598 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 DENND6BQ8NEG7 585 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 SPDYE1Q8NFV5 336 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 SCARF2Q96GP6 870 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 OR4K3Q96R72 315 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 UHRF1Q96T88 793 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 HBEGFQ99075 208 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 NPAS2Q99743 824 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 TIMM29Q9BSF4 260 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 SGPP1Q9BX95 441 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 ITM2CQ9NQX7 267 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 TM7SF3Q9NS93 570 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 GPRC5BQ9NZH0 403 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 ACSL5Q9ULC5 683 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 PRR19A6NJB7 356 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 SLC31A1O15431 190 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 ENTPD5O75356 428 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 CIB2O75838 187 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 CCND1P24385 295 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 MAT2AP31153 395 aaKnown RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 ACSL1P33121 698 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 GNPDA1P46926 289 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 ZFP36L2P47974 494 aaKnown RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 IRF8Q02556 426 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 MAD2L1Q13257 205 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 MLF2Q15773 248 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 RFTN2Q52LD8 501 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 COQ5Q5HYK3 327 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 REP15Q6BDI9 236 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 FAM124AQ86V42 546 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 RGL4Q8IZJ4 473 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 ZNF687Q8N1G0 1237 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 OR2T34Q8NGX1 318 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 TFGQ92734 400 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 RAD51AP1Q96B01 352 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 CDX2Q99626 313 aaPredicted RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 C1orf50Q9BV19 199 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 BTBD1Q9H0C5 482 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 WDR41Q9HAD4 459 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 ASIC5Q9NY37 505 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 NOP53Q9NZM5 478 aaKnown RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 USP36Q9P275 1121 aaKnown RBP12.32□□□□□ -0.44
USP3-213ENST00000559711 ASF1AQ9Y294 204 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 NDUFAF1Q9Y375 327 aa12.32□□□□□ -0.44
USP3-213ENST00000559711 TRPM6Q9BX84 2022 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 ANKRD12Q6UB98 2062 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 E7ENX8 843 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 CACNB4O00305 520 aaPredicted RBP12.31□□□□□ -0.44
USP3-213ENST00000559711 SLC22A3O75751 556 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 PDYNP01213 254 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 LMNAP02545 664 aaKnown RBP12.31□□□□□ -0.44
USP3-213ENST00000559711 CHRNB1P11230 501 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 CD22P20273 847 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 KELP23276 732 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 PRPH2P23942 346 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 HNF4AP41235 474 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 HALP42357 657 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 NME5P56597 212 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 ACTR3P61158 418 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 HMGCS1Q01581 520 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 TAP2Q03519 686 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 RCAN2Q14206 197 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 MMEL1Q495T6 779 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 PYCR3Q53H96 274 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 SGO1Q5FBB7 561 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 C6orf163Q5TEZ5 329 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 IL23RQ5VWK5 629 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 FRG2Q64ET8 278 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 CAPRIN2Q6IMN6 1127 aaKnown RBP12.31□□□□□ -0.44
USP3-213ENST00000559711 CAPN13Q6MZZ7 669 aaPredicted RBP12.31□□□□□ -0.44
USP3-213ENST00000559711 C8orf82Q6P1X6 216 aaPredicted RBP12.31□□□□□ -0.44
USP3-213ENST00000559711 ZNF852Q6ZMS4 543 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 DCUN1D3Q8IWE4 304 aa12.31□□□□□ -0.44
USP3-213ENST00000559711 SELENOMQ8WWX9 145 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms