RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CBSLP0DN79 551 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 PKMP14618 531 aaKnown RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 POLR2CP19387 275 aaPredicted RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 ITPKBP27987 946 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CBSP35520 551 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 LEPRP48357 1165 aaKnown RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 GFERP55789 205 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CRADDP78560 199 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CAV1Q03135 178 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 RIPK1Q13546 671 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 HIF1AQ16665 826 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 ANKRD20A4Q4UJ75 823 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 LACTB2Q53H82 288 aaPredicted RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 ARHGAP40Q5TG30 622 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 INO80CQ6PI98 192 aaPredicted RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 NEK10Q6ZWH5 1172 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 ZNF534Q76KX8 674 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 TMPRSS9Q7Z410 1059 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 TMEM135Q86UB9 458 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 ZFAND4Q86XD8 727 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CILP2Q8IUL8 1156 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 TMEM126BQ8IUX1 230 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 ZBTB2Q8N680 514 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 NAT8LQ8N9F0 302 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 ZFAND2BQ8WV99 257 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CDKL2Q92772 493 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 MFSD3Q96ES6 412 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 DTNBP1Q96EV8 351 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 RHOXF2Q9BQY4 288 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 PPANQ9NQ55 473 aaKnown RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 FGF21Q9NSA1 209 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 IRAK4Q9NWZ3 460 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CHCHD3Q9NX63 227 aaKnown RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 FOXJ2Q9P0K8 574 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 TMEM9Q9P0T7 183 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 TXNDC16Q9P2K2 825 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 PADI1Q9ULC6 663 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 BTRCQ9Y297 605 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 UTP11Q9Y3A2 253 aaKnown RBP8.4□□□□□ -1.06
USP3-208ENST00000558285 LAMA1P25391 3075 aa8.4□□□□□ -1.06
USP3-208ENST00000558285 ISM1B1AKI9 464 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 C21orf140B9A014 251 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 C9J4A7 227 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 ZNF185O15231 689 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 OR1I1O60431 355 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 MSL3P1P0C860 447 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 CYP2A7P20853 494 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 AGXTP21549 392 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 AOAHP28039 575 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 TNFRSF8P28908 595 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 PRDX3P30048 256 aaKnown RBP8.4□□□□□ -1.07
USP3-208ENST00000558285 FMO4P31512 558 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 ETV5P41161 510 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 RPS15P62841 145 aaKnown RBP8.4□□□□□ -1.07
USP3-208ENST00000558285 CFHR1Q03591 330 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 PRKG2Q13237 762 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 SLC5A12Q1EHB4 618 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 ZC3H12BQ5HYM0 836 aaKnown RBP8.4□□□□□ -1.07
USP3-208ENST00000558285 RNASEH2BQ5TBB1 312 aaKnown RBP8.4□□□□□ -1.07
USP3-208ENST00000558285 EMBQ6PCB8 327 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 CCDC121Q6ZUS5 278 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 CENPUQ71F23 418 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 KCNMB4Q86W47 210 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 DTX1Q86Y01 620 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 D2HGDHQ8N465 521 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 BMPERQ8N8U9 685 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 CFAP61Q8NHU2 1237 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 KCNJ9Q92806 393 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 VPS50Q96JG6 964 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 MAP3K3Q99759 626 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 GPR87Q9BY21 358 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 TRIM54Q9BYV2 358 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 CHRNA10Q9GZZ6 450 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 ACTR10Q9NZ32 417 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 SPATA7Q9P0W8 599 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 SRPK3Q9UPE1 567 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 PADI2Q9Y2J8 665 aa8.4□□□□□ -1.07
USP3-208ENST00000558285 ZFC3H1O60293 1989 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 A0A0J9YY10 115 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 A0A1W2PNU3 283 aaPredicted RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 E7EQ34 232 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 AGPSO00116 658 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 ATXN7O15265 892 aaPredicted RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 ZBTB14O43829 449 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 MGRN1O60291 552 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 KLHL41O60662 606 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 GPC4O75487 556 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 SCRG1O75711 98 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 DNAJC8O75937 253 aaPredicted RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 RECKO95980 971 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 PIM1P11309 404 aaPredicted RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 ITGB6P18564 788 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 ACADLP28330 430 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 PDHA2P29803 388 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 CCR7P32248 378 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 CSE1LP55060 971 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 ELOAQ14241 798 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 ARHGAP19Q14CB8 494 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 BBS9Q3SYG4 887 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms