RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 DNAJC22Q8N4W6 341 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 CLEC1AQ8NC01 280 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 CLEC18CQ8NCF0 446 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 GALNT11Q8NCW6 608 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 SKA2Q8WVK7 121 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-235ENST00000557740 DLG3Q92796 817 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 PANX3Q96QZ0 392 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 NUDT9Q9BW91 350 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 RAB11FIP5Q9BXF6 653 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 CHRAC1Q9NRG0 131 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 INTS7Q9NVH2 962 aaKnown RBP14.09□□□□□ -0.15
SHMT2-235ENST00000557740 EURLQ9NYK6 297 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 BFARQ9NZS9 450 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-235ENST00000557740 MARCH4Q9P2E8 410 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-235ENST00000557740 CDYLQ9Y232 598 aa14.09□□□□□ -0.15
SHMT2-235ENST00000557740 SPTAN1Q13813 2472 aaKnown RBP14.08□□□□□ -0.15
SHMT2-235ENST00000557740 USP9XQ93008 2570 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-235ENST00000557740 AP3B1O00203 1094 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 CD3EAPO15446 510 aaKnown RBP14.08□□□□□ -0.16
SHMT2-235ENST00000557740 NDUFS3O75489 264 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 CTSBP07858 339 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 CD9P21926 228 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 AOAHP28039 575 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 UQCRFS1P47985 274 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 CRADDP78560 199 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 RAPSNQ13702 412 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 SSPNQ14714 243 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 CCNG2Q16589 344 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 NKAIN1Q4KMZ8 207 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 VWA5B1Q5TIE3 1220 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 JMJD6Q6NYC1 403 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-235ENST00000557740 LRRC6Q86X45 466 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 FAM20CQ8IXL6 584 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 C2orf73Q8N5S3 287 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-235ENST00000557740 LINC01555Q8NAE3 123 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 OR2Y1Q8NGV0 311 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 OR2L8Q8NGY9 312 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 MAIP1Q8WWC4 291 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 FER1L6-AS2Q96M78 137 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 IL17FQ96PD4 163 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 MFRPQ9BY79 579 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 IL22Q9GZX6 179 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 SLAMF7Q9NQ25 335 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 KLHL20Q9Y2M5 609 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 MRFAP1Q9Y605 127 aa14.08□□□□□ -0.16
SHMT2-235ENST00000557740 USP9YO00507 2555 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-235ENST00000557740 RASGRF2O14827 1237 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 KPNA5O15131 536 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 SLCO2B1O94956 709 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 FGGP02679 453 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 ALPPP05187 535 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 GNLYP22749 145 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 EIF3BP55884 814 aaKnown RBP14.07□□□□□ -0.16
SHMT2-235ENST00000557740 SIX1Q15475 284 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-235ENST00000557740 CYP2A13Q16696 494 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 DCAF10Q5QP82 559 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 DRICH1Q6PGQ1 229 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-235ENST00000557740 OTOAQ7RTW8 1153 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 MCATQ8IVS2 390 aaKnown RBP14.07□□□□□ -0.16
SHMT2-235ENST00000557740 RAB42Q8N4Z0 105 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 DENND1AQ8TEH3 1009 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 FOPNLQ96NB1 174 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 SMAD5Q99717 465 aaKnown RBP14.07□□□□□ -0.16
SHMT2-235ENST00000557740 LZTFL1Q9NQ48 299 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 TREX1Q9NSU2 369 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 LUZP4Q9P127 313 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 MAP10Q9P2G4 905 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 DRG1Q9Y295 367 aaKnown RBP14.07□□□□□ -0.16
SHMT2-235ENST00000557740 ZKSCAN5Q9Y2L8 839 aa14.07□□□□□ -0.16
SHMT2-235ENST00000557740 COL12A1Q99715 3063 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 MED13Q9UHV7 2174 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 A0A1B0GX78 115 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 KLHL41O60662 606 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 AGFG2O95081 481 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 FKBP9O95302 570 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 CCDC175P0C221 793 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 GP1BBP13224 206 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 ALAS2P22557 587 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 RPS3P23396 243 aaKnown RBP eCLIP14.06□□□□□ -0.166e-7■■■□□ 17
SHMT2-235ENST00000557740 VARSP26640 1264 aaKnown RBP14.06□□□□□ -0.16
SHMT2-235ENST00000557740 NMBRP28336 390 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 BDKRB1P46663 353 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 NPY2RP49146 381 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 ARSFP54793 590 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 SF1Q15637 639 aaKnown RBP14.06□□□□□ -0.16
SHMT2-235ENST00000557740 INPP5JQ15735 1006 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-235ENST00000557740 ZC3H12BQ5HYM0 836 aaKnown RBP14.06□□□□□ -0.16
SHMT2-235ENST00000557740 SLC6A19Q695T7 634 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 MRNIPQ6NTE8 343 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 TTLL10Q6ZVT0 673 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 LMNTD1Q8N9Z9 388 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 TTC29Q8NA56 475 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-235ENST00000557740 PNPLA2Q96AD5 504 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 FKBP10Q96AY3 582 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 RAD51AP1Q96B01 352 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 PTERQ96BW5 349 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 MENTQ9BUN1 341 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 SLC29A3Q9BZD2 475 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 P2RY12Q9H244 342 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms