RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 COX14Q96I36 57 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 MRGPRX2Q96LB1 330 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 OR2M4Q96R27 311 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 ELAC2Q9BQ52 826 aaKnown RBP12.2□□□□□ -0.46
SHMT2-230ENST00000557427 PLCD4Q9BRC7 762 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 SLC25A23Q9BV35 468 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 MFRPQ9BY79 579 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 SLC29A3Q9BZD2 475 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 VPS11Q9H270 941 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 FGFR1OP2Q9NVK5 253 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 SIDT1Q9NXL6 827 aaKnown RBP12.2□□□□□ -0.46
SHMT2-230ENST00000557427 MAP10Q9P2G4 905 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 PCDHGA9Q9Y5G4 932 aaKnown RBP12.2□□□□□ -0.46
SHMT2-230ENST00000557427 CCDC168Q8NDH2 2452 aa12.2□□□□□ -0.46
SHMT2-230ENST00000557427 FAM237BA0A1B0GVD1 139 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 LOC285095A0A1B0GVY8 99 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 PIPSLA2A3N6 862 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 BUD23O43709 281 aaKnown RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 SLC25A14O95258 325 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 DHRS4L1P0CG22 281 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 PYGBP11216 843 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 BPIP17213 487 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 GEMP55040 296 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 GPLD1P80108 840 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 CDH17Q12864 832 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 IFT88Q13099 833 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 SLC14A2Q15849 920 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 ZRANB3Q5FWF4 1079 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 HENMT1Q5T8I9 393 aaKnown RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 SLC6A19Q695T7 634 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 C6orf15Q6UXA7 325 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 CHST15Q7LFX5 561 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 RAVER1Q8IY67 606 aaKnown RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 OTUD6BQ8N6M0 293 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 RBMXL3Q8N7X1 1067 aaKnown RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 BLOC1S5Q8TDH9 187 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 LRRC8CQ8TDW0 803 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 ACMSDQ8TDX5 336 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 SNRNP40Q96DI7 357 aaKnown RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 CERS2Q96G23 380 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 SCARF2Q96GP6 870 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 PAIP2Q9BPZ3 127 aaKnown RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 TRIM56Q9BRZ2 755 aaKnown RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 ULBP3Q9BZM4 244 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 IL22Q9GZX6 179 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 OR2AG1Q9H205 316 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 ASF1BQ9NVP2 202 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 GRID1Q9ULK0 1009 aa12.19□□□□□ -0.46
SHMT2-230ENST00000557427 PCYT1BQ9Y5K3 369 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-230ENST00000557427 CCT8L1PA6NM43 557 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 GOLGA8RI6L899 631 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 COPEO14579 308 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 UGT1A9O60656 530 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 SNX2O60749 519 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 DNAJC6O75061 913 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 RECKO95980 971 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 ADRA1DP25100 572 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 ETV4P43268 484 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 CCL11P51671 97 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 CRADDP78560 199 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 MPP3Q13368 585 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 WDR74Q6RFH5 385 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-230ENST00000557427 PACS1Q6VY07 963 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 CCDC121Q6ZUS5 278 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 SPATA21Q7Z572 469 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 DNAAF3Q8N9W5 541 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 SRPK1Q96SB4 655 aaKnown RBP12.18□□□□□ -0.46
SHMT2-230ENST00000557427 APOL2Q9BQE5 337 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 FICDQ9BVA6 458 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 PITPNM3Q9BZ71 974 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 UGT1A7Q9HAW7 530 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 UGT1A10Q9HAW8 530 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 UGT1A8Q9HAW9 530 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 SLAMF7Q9NQ25 335 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 RAD18Q9NS91 495 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 ATXN10Q9UBB4 475 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 ITGB1BP2Q9UKP3 347 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 SOX13Q9UN79 622 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 PCDHGA6Q9Y5G7 932 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 POLEQ07864 2286 aa12.18□□□□□ -0.46
SHMT2-230ENST00000557427 DIDO1Q9BTC0 2240 aaKnown RBP12.18□□□□□ -0.46
SHMT2-230ENST00000557427 A0A1B0GTL3 188 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 HMX2A2RU54 273 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 MYO1CO00159 1063 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 GRID2O43424 1007 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 EDF1O60869 148 aaKnown RBP12.17□□□□□ -0.46
SHMT2-230ENST00000557427 DIAPH2O60879 1101 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 MTX2O75431 263 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 EML2O95834 649 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 EPOP01588 193 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 ACP5P13686 325 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 ZNF8P17098 575 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-230ENST00000557427 PPM1FP49593 454 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-230ENST00000557427 OLIG2Q13516 323 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 PTPRCAPQ14761 206 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 TESK1Q15569 626 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 ZXDCQ2QGD7 858 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-230ENST00000557427 ANKRD20A4Q4UJ75 823 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 TRAM1L1Q8N609 369 aa12.17□□□□□ -0.46
SHMT2-230ENST00000557427 CCT6BQ92526 530 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms