RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	DNAJC7	Q99615	494 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	SPSB2	Q99619	263 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	CHP1	Q99653	195 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	HEMGN	Q9BXL5	484 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	SOX17	Q9H6I2	414 aa	Predicted RBP	12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	ARNT2	Q9HBZ2	717 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	SEMA3G	Q9NS98	782 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	SPTLC3	Q9NUV7	552 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	IL1RAPL1	Q9NZN1	696 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	NXT1	Q9UKK6	140 aa	Known RBP	12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689	OTOG	Q6ZRI0	2925 aa		12.15	□□□□□ -0.46
SHMT2-223	ENST00000556689		H7C0S8	307 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	QSOX1	O00391	747 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	DSCR3	O14972	297 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	KLHL18	O94889	574 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	FTH1	P02794	183 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	PRSS56	P0CW18	603 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	PSMB4	P28070	264 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	PEBP1	P30086	187 aa	Known RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	PTGER4	P35408	488 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	NSG1	P42857	185 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	KCNK10	P57789	538 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	PLOD1	Q02809	727 aa	Predicted RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	CACNG1	Q06432	222 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689		Q0VFX4	171 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	GRM7	Q14831	915 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	RBBP7	Q16576	425 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZC3H12B	Q5HYM0	836 aa	Known RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	YOD1	Q5VVQ6	348 aa	Predicted RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF324B	Q6AW86	544 aa	Predicted RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	SHISA6	Q6ZSJ9	500 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	COX15	Q7KZN9	410 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	KATNAL2	Q8IYT4	538 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	ELMO1	Q92556	727 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	LRRC45	Q96CN5	670 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	CDKN2AIPNL	Q96HQ2	116 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	MAGEB10	Q96LZ2	347 aa	Predicted RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	PPP1R2P1	Q96PQ5	205 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	TBL1Y	Q9BQ87	522 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	CHST11	Q9NPF2	352 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	NLE1	Q9NVX2	485 aa	Predicted RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	INTU	Q9ULD6	942 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	PLAGL1	Q9UM63	463 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	KLHL20	Q9Y2M5	609 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	FBN2	P35556	2912 aa		12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	DIDO1	Q9BTC0	2240 aa	Known RBP	12.14	□□□□□ -0.47
SHMT2-223	ENST00000556689	CCDC88C	Q9P219	2028 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	APC	P25054	2843 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	SLC5A10	A0PJK1	596 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	DYTN	A2CJ06	578 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	VSTM2B	A6NLU5	285 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	BHMG1	C9JSJ3	638 aa	Predicted RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	APOC4-APOC2	K7ER74	178 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	PCDH17	O14917	1159 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	STK10	O94804	968 aa	Known RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	APOC2	P02655	101 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	MAG	P20916	626 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	ARG2	P78540	354 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	TRIM14	Q14142	442 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	SPARCL1	Q14515	664 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	DBN1	Q16643	649 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	FAM214A	Q32MH5	1076 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	TCTE1	Q5JU00	501 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	CCDC181	Q5TID7	509 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	NAPRT	Q6XQN6	538 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	BBS12	Q6ZW61	710 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	GDF7	Q7Z4P5	450 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	PIANP	Q8IYJ0	282 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	STYX	Q8WUJ0	223 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	ITLN2	Q8WWU7	325 aa	Predicted RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	SLC22A18	Q96BI1	424 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	MRFAP1L1	Q96HT8	127 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	ALS2CR12	Q96Q35	445 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	TRIM56	Q9BRZ2	755 aa	Known RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	LUC7L	Q9NQ29	371 aa	Known RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	CUTC	Q9NTM9	273 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	INTS7	Q9NVH2	962 aa	Known RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	SUCO	Q9UBS9	1254 aa	Known RBP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	PRSS21	Q9Y6M0	314 aa		12.13	□□□□□ -0.47
SHMT2-223	ENST00000556689	CSMD2	Q7Z408	3487 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	KCNN4	O15554	427 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	NRDC	O43847	1150 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	HP	P00738	406 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	TPH1	P17752	444 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	HTR1E	P28566	365 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	GRIA3	P42263	894 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	OR1D4	P47884	311 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	CARS	P49589	748 aa	Known RBP	12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	RAB28	P51157	221 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	ITIH4	Q14624	930 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	SYTL3	Q4VX76	610 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	DARS2	Q6PI48	645 aa	Known RBP	12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	FIGLA	Q6QHK4	219 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	TMEM207	Q6UWW9	146 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	GFRAL	Q6UXV0	394 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	MICALCL	Q6ZW33	695 aa		12.12	□□□□□ -0.47

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