RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 ATP13A4Q4VNC1 1196 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 ABHD17BQ5VST6 288 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 YOD1Q5VVQ6 348 aaPredicted RBP13.19□□□□□ -0.3
PRPF39-204ENST00000553605 CNSTQ6PJW8 725 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 RIPOR1Q6ZS17 1223 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 NLRP9Q7RTR0 991 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 PRSS58Q8IYP2 241 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 EID3Q8N140 333 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 TAB3Q8N5C8 712 aaPredicted RBP13.19□□□□□ -0.3
PRPF39-204ENST00000553605 METTL27Q8N6F8 245 aaPredicted RBP13.19□□□□□ -0.3
PRPF39-204ENST00000553605 PQLC3Q8N755 202 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 NIPA2Q8N8Q9 360 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 STT3BQ8TCJ2 826 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 MIEF2Q96C03 454 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 TRIM11Q96F44 468 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 DCUN1D1Q96GG9 259 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 BTBD6Q96KE9 485 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 ZNF830Q96NB3 372 aaPredicted RBP13.19□□□□□ -0.3
PRPF39-204ENST00000553605 ZNF670Q9BS34 389 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 COG4Q9H9E3 785 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 UBP1Q9NZI7 540 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 ST6GALNAC2Q9UJ37 374 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 NPIPA1Q9UND3 350 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 LUC7L2Q9Y383 392 aaKnown RBP13.19□□□□□ -0.3
PRPF39-204ENST00000553605 MAU2Q9Y6X3 613 aa13.19□□□□□ -0.3
PRPF39-204ENST00000553605 ISM1B1AKI9 464 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 TTI1O43156 1089 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 ZNHIT1O43257 154 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 TSPAN12O95859 305 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 CELA2AP08217 269 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 ZGLP1P0C6A0 271 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 RALBP11234 206 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 PRLHRP49683 370 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 MYBPHQ13203 477 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 GRM7Q14831 915 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 HADHQ16836 314 aaKnown RBP13.18□□□□□ -0.3
PRPF39-204ENST00000553605 ZNF449Q6P9G9 518 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 GLT6D1Q7Z4J2 308 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 BLOC1S5Q8TDH9 187 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 LIME1Q9H400 295 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 ASB8Q9H765 288 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 DNAJB12Q9NXW2 375 aaKnown RBP13.18□□□□□ -0.3
PRPF39-204ENST00000553605 HACD3Q9P035 362 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 IP6K2Q9UHH9 426 aa13.18□□□□□ -0.3
PRPF39-204ENST00000553605 FLNAP21333 2647 aaKnown RBP13.18□□□□□ -0.3
PRPF39-204ENST00000553605 CPAMD8Q8IZJ3 1885 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 IGHV1-45A0A0A0MS14 117 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 LOC285095A0A1B0GVY8 99 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 NKX2-6A6NCS4 301 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 PRRG2O14669 202 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 ASNA1O43681 348 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 HOXD4P09016 255 aaPredicted RBP13.17□□□□□ -0.3
PRPF39-204ENST00000553605 ITGAMP11215 1152 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 CXCR2P25025 360 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 MCM3P25205 808 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 MEOX1P50221 254 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 EEF1A2Q05639 463 aaKnown RBP13.17□□□□□ -0.3
PRPF39-204ENST00000553605 ZNF33BQ06732 778 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 TFF3Q07654 80 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 PTPRCAPQ14761 206 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 PDK2Q15119 407 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 FAM214AQ32MH5 1076 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 SIRPB2Q5JXA9 342 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 CDKAL1Q5VV42 579 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 TMEM198Q66K66 360 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 MAP7D3Q8IWC1 876 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 SLC25A41Q8N5S1 370 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 TTC29Q8NA56 475 aaPredicted RBP13.17□□□□□ -0.3
PRPF39-204ENST00000553605 GLOD4Q9HC38 313 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 ZNF304Q9HCX3 659 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 OR6C2Q9NZP2 312 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 ZNF282Q9UDV7 671 aaPredicted RBP13.17□□□□□ -0.3
PRPF39-204ENST00000553605 KLHL20Q9Y2M5 609 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 HCFC1P51610 2035 aa13.17□□□□□ -0.3
PRPF39-204ENST00000553605 A0A1W2PQ72 361 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 STX7O15400 261 aaKnown RBP13.16□□□□□ -0.3
PRPF39-204ENST00000553605 ATP1B2P14415 290 aaPredicted RBP13.16□□□□□ -0.3
PRPF39-204ENST00000553605 MAGP20916 626 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 CDK11BP21127 795 aaKnown RBP13.16□□□□□ -0.3
PRPF39-204ENST00000553605 DNASE1P24855 282 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 MSX1P28360 303 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 GJC1P36383 396 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 CHRNA4P43681 627 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 EMP2P54851 167 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 AP2B1P63010 937 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 UBXN1Q04323 297 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 RPA4Q13156 261 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 KIR2DS3Q14952 304 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 TCTE1Q5JU00 501 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 NEK10Q6ZWH5 1172 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 CXXC5Q7LFL8 322 aaKnown RBP13.16□□□□□ -0.3
PRPF39-204ENST00000553605 ZNF571Q7Z3V5 609 aaPredicted RBP13.16□□□□□ -0.3
PRPF39-204ENST00000553605 LAPTM4BQ86VI4 370 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 GHDCQ8N2G8 530 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 DTWD1Q8N5C7 304 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 OR5AR1Q8NGP9 310 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 LILRB4Q8NHJ6 448 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 ASB5Q8WWX0 329 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 FAF2Q96CS3 445 aa13.16□□□□□ -0.3
PRPF39-204ENST00000553605 ALPK1Q96QP1 1244 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms