RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 OR2T5Q6IEZ7 315 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 ARMC8Q8IUR7 673 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 C10orf111Q8N326 155 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 OR2T29Q8NH02 315 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 STARD8Q92502 1023 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 BARD1Q99728 777 aaKnown RBP17.15■□□□□ 0.34
SYNE3-202ENST00000553340 FAM126AQ9BYI3 521 aaPredicted RBP17.15■□□□□ 0.34
SYNE3-202ENST00000553340 NACA2Q9H009 215 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 WWOXQ9NZC7 414 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 OARD1Q9Y530 152 aa17.15■□□□□ 0.34
SYNE3-202ENST00000553340 ZFP37Q9Y6Q3 630 aaPredicted RBP17.15■□□□□ 0.34
SYNE3-202ENST00000553340 CHD5Q8TDI0 1954 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 MYO1GB0I1T2 1018 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 WNT9AO14904 365 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF682O95780 498 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 EIF2S1P05198 315 aaKnown RBP17.14■□□□□ 0.33
SYNE3-202ENST00000553340 MYCLP1P12525 358 aaPredicted RBP17.14■□□□□ 0.33
SYNE3-202ENST00000553340 RGS4P49798 205 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 KCNQ1P51787 676 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 FCGRTP55899 365 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CACNG1Q06432 222 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 ABHD18Q0P651 414 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 GBX1Q14549 363 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 C5orf22Q49AR2 442 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 GNASQ5JWF2 1037 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 SPRYD7Q5W111 196 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 KDM4DQ6B0I6 523 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CXCL17Q6UXB2 119 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 SNX20Q7Z614 316 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 PSMA8Q8TAA3 256 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 ZHX1-C8orf76Q96EF9 292 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CD244Q9BZW8 370 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CIPCQ9C0C6 399 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CPNE5Q9HCH3 593 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 TM9SF3Q9HD45 589 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 GREB1Q4ZG55 1949 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 TRPM7Q96QT4 1865 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 AREL1O15033 823 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CCNDBP1O95273 360 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 GSNP06396 782 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 BCKDHAP12694 445 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CD40LGP29965 261 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 SLC6A4P31645 630 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 S100A3P33764 101 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 PTPRRQ15256 657 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CATSPEREQ5SY80 951 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CEP68Q76N32 757 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 LACC1Q8IV20 430 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 TTC29Q8NA56 475 aaPredicted RBP17.14■□□□□ 0.33
SYNE3-202ENST00000553340 MCFD2Q8NI22 146 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 ULK4Q96C45 1275 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 APOL5Q9BWW9 433 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 CCSER2Q9H7U1 834 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 OSGIN1Q9UJX0 560 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 MAN2B2Q9Y2E5 1009 aa17.14■□□□□ 0.33
SYNE3-202ENST00000553340 A0A0U1RQS6 177 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 CLDN24A6NM45 220 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 OXSR1O95747 527 aaPredicted RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 CD36P16671 472 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 ALDH7A1P49419 539 aaKnown RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 CDH4P55283 916 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 TPTEP56180 551 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 PHC1P78364 1004 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 CDC20Q12834 499 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 FADDQ13158 208 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 PHKG1Q16816 387 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 DEPDC1Q5TB30 811 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 RHNO1Q9BSD3 238 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 CLPBQ9H078 707 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 SP140LQ9H930 580 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 PARVBQ9HBI1 364 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 IL1RAPQ9NPH3 570 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 SERHLQ9NQF3 203 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 TRPS1Q9UHF7 1281 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 ABCG2Q9UNQ0 655 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 ISPDA4D126 451 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 EFCAB9A8MZ26 197 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 MANBAO00462 879 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 B4GALT3O60512 393 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 TLR5O60602 858 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 EBLN1P0CF75 366 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 PCYT1AP49585 367 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 RPS14P62263 151 aaKnown RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 MAD2L1BPQ15013 274 aaPredicted RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 SMN1Q16637 294 aaKnown RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 CERS6Q6ZMG9 384 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 TSPYL5Q86VY4 417 aaPredicted RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF280BQ86YH2 543 aa17.13■□□□□ 0.33
SYNE3-202ENST00000553340 RPL3LQ92901 407 aaKnown RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 NDRG4Q9ULP0 352 aaKnown RBP17.13■□□□□ 0.33
SYNE3-202ENST00000553340 CBX4O00257 560 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 ACSL4O60488 711 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 F11P03951 625 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 DNAJA1P31689 397 aaKnown RBP17.12■□□□□ 0.33
SYNE3-202ENST00000553340 EIF2DP41214 584 aaKnown RBP17.12■□□□□ 0.33
SYNE3-202ENST00000553340 SELENBP1Q13228 472 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 IPCEF1Q8WWN9 437 aaPredicted RBP17.12■□□□□ 0.33
SYNE3-202ENST00000553340 TRIB2Q92519 343 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 PTPN18Q99952 460 aa17.12■□□□□ 0.33
SYNE3-202ENST00000553340 NTMT1Q9BV86 223 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms