RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 DYNLT1P63172 113 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 MYL5Q02045 173 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 RBPJQ06330 500 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 OLIG2Q13516 323 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 ATG9BQ674R7 924 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 ARHGEF18Q6ZSZ5 1173 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 LAPTM4BQ86VI4 370 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 OR13C4Q8NGS5 318 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 DNAJB8Q8NHS0 232 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 DCUN1D1Q96GG9 259 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 TSPAN10Q9H1Z9 355 aaPredicted RBP12.35□□□□□ -0.43
VPS29-211ENST00000553128 CRLS1Q9UJA2 301 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 ZNF835Q9Y2P0 537 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 TDRKHQ9Y2W6 561 aaKnown RBP12.35□□□□□ -0.43
VPS29-211ENST00000553128 ACANP16112 2415 aa12.35□□□□□ -0.43
VPS29-211ENST00000553128 A0A087X0T9 212 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 LRRD1A4D1F6 860 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 MAP2K7O14733 419 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 PPP1R12AO14974 1030 aaPredicted RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 AGTP01019 485 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 FAM228BP0C875 321 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 SHMT2P34897 504 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 ARSFP54793 590 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 CASP6P55212 293 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 FANCCQ00597 558 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 EEF1A2Q05639 463 aaKnown RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 HIBCHQ6NVY1 386 aaPredicted RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 NAPRTQ6XQN6 538 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 C3P1Q6ZMU1 363 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 C2orf73Q8N5S3 287 aaPredicted RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 CLDN19Q8N6F1 224 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 STT3BQ8TCJ2 826 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 RTN4Q9NQC3 1192 aaKnown RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 STOX2Q9P2F5 926 aaPredicted RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 C3orf18Q9UK00 162 aa12.34□□□□□ -0.43
VPS29-211ENST00000553128 NXT1Q9UKK6 140 aaKnown RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 MRPS2Q9Y399 296 aaKnown RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 PRRC2AP48634 2157 aaKnown RBP12.34□□□□□ -0.43
VPS29-211ENST00000553128 NSG1A0A0A6YYJ2 146 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 PRAMEF2O60811 474 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 ZGLP1P0C6A0 271 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 ITGAMP11215 1152 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 RALBP11234 206 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 PIM1P11309 404 aaPredicted RBP12.33□□□□□ -0.44
VPS29-211ENST00000553128 ACADLP28330 430 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 NSG1P42857 185 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 ST13P50502 369 aaKnown RBP12.33□□□□□ -0.44
VPS29-211ENST00000553128 BRD3Q15059 726 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 TFDP3Q5H9I0 405 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 Q6ZPB1 254 aaPredicted RBP12.33□□□□□ -0.44
VPS29-211ENST00000553128 NDUFAF7Q7L592 441 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 NLRP9Q7RTR0 991 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 SPPL2CQ8IUH8 684 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 ZNF567Q8N184 647 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.33□□□□□ -0.44
VPS29-211ENST00000553128 MAGED4Q96JG8 741 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 COPS8Q99627 209 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 GORASP1Q9BQQ3 440 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 OR6C2Q9NZP2 312 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 TNFRSF10DQ9UBN6 386 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 CIDEBQ9UHD4 219 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 ASF1AQ9Y294 204 aa12.33□□□□□ -0.44
VPS29-211ENST00000553128 CPAMD8Q8IZJ3 1885 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 IGLV3-16A0A075B6K0 115 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 FAM227AF5H4B4 570 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 FFAR3O14843 346 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 GPR42O15529 346 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 SERPINA7P05543 415 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 PECAM1P16284 738 aaPredicted RBP12.32□□□□□ -0.44
VPS29-211ENST00000553128 DNAJA1P31689 397 aaKnown RBP12.32□□□□□ -0.44
VPS29-211ENST00000553128 CARSP49589 748 aaKnown RBP12.32□□□□□ -0.44
VPS29-211ENST00000553128 IST1P53990 364 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 RPA4Q13156 261 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 TAF1AQ15573 450 aaPredicted RBP12.32□□□□□ -0.44
VPS29-211ENST00000553128 TAX1BP1Q86VP1 789 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 RFX6Q8HWS3 928 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 TGIF2LYQ8IUE0 185 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 LINC01555Q8NAE3 123 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 MIEF2Q96C03 454 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 VPS50Q96JG6 964 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 ZNF285Q96NJ3 590 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 FCRL5Q96RD9 977 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 APOL2Q9BQE5 337 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 FICDQ9BVA6 458 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 HES7Q9BYE0 225 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 GPAMQ9HCL2 828 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 CTTNBP2NLQ9P2B4 639 aa12.32□□□□□ -0.44
VPS29-211ENST00000553128 KLHL8Q9P2G9 620 aaPredicted RBP12.32□□□□□ -0.44
VPS29-211ENST00000553128 IGHV1-45A0A0A0MS14 117 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 OR5H15A6NDH6 313 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 C2orf81A6NN90 581 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 CFAP99D6REC4 459 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 ADAM10O14672 748 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 FANCGO15287 622 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 NRP2O60462 931 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 WFS1O76024 890 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 BMP10O95393 424 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 DRD2P14416 443 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 IGFBP2P18065 325 aa12.31□□□□□ -0.44
VPS29-211ENST00000553128 TNNT3P45378 269 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms