RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 FAM181AQ8N9Y4 354 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 KIF12Q96FN5 646 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 MARK4Q96L34 752 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 IL12RB2Q99665 862 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ZNF717Q9BY31 904 aaPredicted RBP5.15□□□□□ -1.58
USP28-213ENST00000544967 TMEM245Q9H330 911 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 CD93Q9NPY3 652 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 RPRD1BQ9NQG5 326 aaKnown RBP5.15□□□□□ -1.58
USP28-213ENST00000544967 PRDM8Q9NQV8 689 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 DZANK1Q9NVP4 752 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 FBXL12Q9NXK8 326 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 KIAA1257Q9ULG3 409 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 LRFN2Q9ULH4 789 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 HES2Q9Y543 173 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 PDE4DIPQ5VU43 2346 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 SYNJ2BP-COX16A0A087WUM0 186 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 C19orf67A6NJJ6 358 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 WASH4PA8MWX3 477 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 E9PQ18 207 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 FXYD1O00168 92 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 CTDSP2O14595 271 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 ZNF780AO75290 641 aaPredicted RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 SNAPC5O75971 98 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 WDPCPO95876 746 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 ITGB3P05106 788 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 CHRNGP07510 517 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 CFHP08603 1231 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 FGF4P08620 206 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 PTX3P26022 381 aaPredicted RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 CDH6P55285 790 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 SLC35A2P78381 396 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 ACY1Q03154 408 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 TRAF3Q13114 568 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 AAK1Q2M2I8 961 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 SMU1Q2TAY7 513 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 SV2CQ496J9 727 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 PTPN20Q4JDL3 420 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 FAM205BPQ63HN1 556 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 FSTL4Q6MZW2 842 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 FUT10Q6P4F1 479 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 ZNF438Q7Z4V0 828 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 CCDC190Q86UF4 302 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 UNC93AQ86WB7 457 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 RAB43Q86YS6 212 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 ZDHHC17Q8IUH5 632 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 CCDC103Q8IW40 242 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 PM20D2Q8IYS1 436 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 C1orf52Q8N6N3 182 aaKnown RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 PCDH20Q8N6Y1 951 aaKnown RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 VN1R2Q8NFZ6 395 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 OR10T2Q8NGX3 314 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 FIG4Q92562 907 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 SLC38A4Q969I6 547 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 AP2M1Q96CW1 435 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 PABPC5Q96DU9 382 aaKnown RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 PDLIM5Q96HC4 596 aaKnown RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 WDFY2Q96P53 400 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 SLC30A3Q99726 388 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 C1QTNF7Q9BXJ2 289 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 WNT5BQ9H1J7 359 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 NSUN3Q9H649 340 aaKnown RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 DPP3Q9NY33 737 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 TRMT6Q9UJA5 497 aaKnown RBP5.15□□□□□ -1.59
USP28-213ENST00000544967 VPS4AQ9UN37 437 aa5.15□□□□□ -1.59
USP28-213ENST00000544967 A0A1W2PQ67 120 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 WDR27A2RRH5 827 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 C2CD4BA6NLJ0 364 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 GOLGA8JA6NMD2 632 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 hCG_2039718K7EN88 272 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PSMD3O43242 534 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 RNGTTO60942 597 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 SEC24DO94855 1032 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 SEMA3DO95025 777 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 METTL18O95568 372 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 GLP2RO95838 553 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SLC6A2P23975 617 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 AKAP5P24588 427 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ELK4P28324 431 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 CD68P34810 354 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 ASMTP46597 345 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 NDUFV1P49821 464 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 EMX1Q04741 257 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 GRIN2CQ14957 1233 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 DUOXA2Q1HG44 320 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 AGKQ53H12 422 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SULT1C3Q6IMI6 304 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 SLC26A9Q7LBE3 791 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PIWIL3Q7Z3Z3 882 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 DCP1BQ8IZD4 617 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 OFCC1Q8IZS5 231 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 CRYBG2Q8N1P7 616 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 PLD6Q8N2A8 252 aaKnown RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 MPP5Q8N3R9 675 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 RNF148Q8N7C7 305 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ST13P5Q8NFI4 369 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 OR5B17Q8NGF7 314 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 MAGEE2Q8TD90 523 aaPredicted RBP5.14□□□□□ -1.59
USP28-213ENST00000544967 MCOLN3Q8TDD5 553 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 ADAMTS18Q8TE60 1221 aa5.14□□□□□ -1.59
USP28-213ENST00000544967 TMEM125Q96AQ2 219 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms