RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TNKS2Q9H2K2 1166 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 SCAMP3O14828 347 aaKnown RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 IL7P13232 177 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 AXLP30530 894 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 FEN1P39748 380 aaKnown RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 CASP3P42574 277 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 HSPA14Q0VDF9 509 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 CDK5R2Q13319 367 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 STEAP3Q658P3 488 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 C11orf88Q6PI97 169 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 DCP2Q8IU60 420 aaKnown RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 GPC2Q8N158 579 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 STK40Q8N2I9 435 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 SNAPC3Q92966 411 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 CCDC120Q96HB5 630 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 C11orf16Q9NQ32 467 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 RAB23Q9ULC3 237 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 PCDHGA11Q9Y5H2 935 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 ARAP2Q8WZ64 1704 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 ICMTO60725 284 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 SLITRK5O94991 958 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 ZNF648Q5T619 568 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 ASB18Q6ZVZ8 466 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 MED8Q96G25 268 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 CTRCQ99895 268 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 PAPPAQ13219 1627 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 MEN1O00255 615 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 FGF10O15520 208 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 PTTG1O95997 202 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 DHFRP00374 187 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 IFNA14P01570 189 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 OPN1SWP03999 348 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 PKMP14618 531 aaKnown RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 ZNF7P17097 686 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 TNNI3P19429 210 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 C4BPBP20851 252 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 CCNCP24863 283 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 KIR3DL1P43629 444 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 C6orf136Q5SQH8 315 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 PTCD2Q8WV60 388 aaKnown RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 UBA2Q9UBT2 640 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 INTS6Q9UL03 887 aaKnown RBP13.94□□□□□ -0.18
LIMS1-215ENST00000544547 MATN3O15232 486 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 HTR1EP28566 365 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 RORCP51449 518 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 CSNK2BP67870 215 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 PFKPQ01813 784 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 NFE2L1Q14494 772 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 SLC39A12Q504Y0 691 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 AGAP6Q5VW22 663 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 TBPL2Q6SJ96 375 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 HACD2Q6Y1H2 254 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 KRT78Q8N1N4 520 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 TMEM125Q96AQ2 219 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 AGAP4Q96P64 663 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 RNF39Q9H2S5 420 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 FBXW11Q9UKB1 542 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 GPSM3Q9Y4H4 160 aa13.94□□□□□ -0.18
LIMS1-215ENST00000544547 A0A1W2PRG6 482 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 USP2O75604 605 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-215ENST00000544547 IQCF3P0C7M6 154 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 MC4RP32245 332 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 ZNF135P52742 658 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-215ENST00000544547 LGALS3BPQ08380 585 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 TAC4Q86UU9 113 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 NELL1Q92832 810 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 RGS17Q9UGC6 210 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DYRK1BQ9Y463 629 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 LAMB1P07942 1786 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 SCN7AQ01118 1682 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 MYBPHLA2RUH7 354 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 IQCF5A8MTL0 148 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 ORC5O43913 435 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 STSP08842 583 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 ALDOCP09972 364 aaKnown RBP13.93□□□□□ -0.18
LIMS1-215ENST00000544547 NR2F6P10588 404 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 GPX3P22352 226 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 ACOX1Q15067 660 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 METTL4Q8N3J2 472 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 EBPLQ9BY08 206 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 SLC2A11Q9BYW1 496 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 MARCH2Q9P0N8 246 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 STOML2Q9UJZ1 356 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 COL22A1Q8NFW1 1626 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-215ENST00000544547 A0A1B0GW55 424 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 MANSC4A6NHS7 340 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-215ENST00000544547 SLC28A1O00337 649 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 PLD2O14939 933 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 SLC7A4O43246 635 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 NIPSNAP2O75323 286 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DUX4L2P0CJ85 424 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DUX4L3P0CJ86 424 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DUX4L4P0CJ87 422 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DUX4L5P0CJ88 424 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DUX4L6P0CJ89 424 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 DUX4L7P0CJ90 424 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 BCL7AQ4VC05 210 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 ADAMTSL2Q86TH1 951 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 OR5H6Q8NGV6 325 aa13.93□□□□□ -0.18
LIMS1-215ENST00000544547 ZNF675Q8TD23 568 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms