RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TFEBP19484 476 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 ID4P47928 161 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 PPM1FP49593 454 aaPredicted RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 PGGT1BP53609 377 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 PNLIPRP1P54315 467 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 INSM1Q01101 510 aaPredicted RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 TSNQ15631 228 aaKnown RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 PPP1R3AQ16821 1122 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 AMZ1Q400G9 498 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 PPM1JQ5JR12 505 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 CEP85LQ5SZL2 805 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 SULT1C3Q6IMI6 304 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 FBXO38Q6PIJ6 1188 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 ZNF761Q86XN6 746 aaPredicted RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 KCTD4Q8WVF5 259 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 NCSTNQ92542 709 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 DLG3Q92796 817 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 FBXL8Q96CD0 374 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 NXNL1Q96CM4 212 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 PGM2Q96G03 612 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 GPR78Q96P69 363 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 ZIM3Q96PE6 472 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 DEPDC7Q96QD5 511 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 MRPL57Q9BQC6 102 aaKnown RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 OGFRQ9NZT2 677 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 SEMA5BQ9P283 1151 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 TSR3Q9UJK0 312 aaKnown RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 ADAMTS6Q9UKP5 1117 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 RUVBL2Q9Y230 463 aaKnown RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 MN1Q10571 1320 aaPredicted RBP11.8□□□□□ -0.52
DDX55-210ENST00000543016 WDR87Q6ZQQ6 2873 aa11.8□□□□□ -0.52
DDX55-210ENST00000543016 UQCRHLA0A096LP55 91 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 NPEPPSL1A6NEC2 478 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 GIPC1O14908 333 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CAPN5O15484 640 aaPredicted RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 MAP3K7O43318 606 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 GLRA3O75311 464 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CCNDBP1O95273 360 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 SLC16A8O95907 504 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 SYF2O95926 243 aaKnown RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 MT-CO3P00414 261 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 S100BP04271 92 aaPredicted RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 UQCRHP07919 91 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CHRM5P08912 532 aaPredicted RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 ANKRD34CP0C6C1 535 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 TPBGLP0DKB5 382 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 TYRP1P17643 537 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CCKBRP32239 447 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CRHR1P34998 444 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 ABATP80404 500 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 SLC18A2Q05940 514 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 ZFP36L1Q07352 338 aaKnown RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 DLG1Q12959 904 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 TGFBIQ15582 683 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 PHKG1Q16816 387 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 SLC5A12Q1EHB4 618 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 METTL2BQ6P1Q9 378 aaKnown RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 SH2D5Q6ZV89 423 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 USP53Q70EK8 1073 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 TRABD2AQ86V40 505 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 KMT5CQ86Y97 462 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 SYTL1Q8IYJ3 562 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 ADGRF3Q8IZF5 1079 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CYP4X1Q8N118 509 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 DENND1AQ8TEH3 1009 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 ZNF480Q8WV37 535 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 RSC1A1Q92681 617 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 STRADBQ9C0K7 418 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 ZMYND15Q9H091 742 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CNOT10Q9H9A5 744 aaKnown RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 C1GALT1Q9NS00 363 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 PCMTD2Q9NV79 361 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 MKS1Q9NXB0 559 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 NUDT4Q9NZJ9 180 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 AKAP7Q9P0M2 348 aaPredicted RBP11.79□□□□□ -0.52
DDX55-210ENST00000543016 POMT2Q9UKY4 750 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 GRID1Q9ULK0 1009 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 RNF112Q9ULX5 631 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 CLCA2Q9UQC9 943 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 PCDHB11Q9Y5F2 797 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 ACTL7BQ9Y614 415 aa11.79□□□□□ -0.52
DDX55-210ENST00000543016 BPTFQ12830 3046 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 TLCD2A6NGC4 264 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 E7ENX8 843 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 BTN3A3O00478 584 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 HGSO14964 777 aaPredicted RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 KRT4P19013 534 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 POLR2CP19387 275 aaPredicted RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 HRH2P25021 359 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 IMPA1P29218 277 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 OAS2P29728 719 aaKnown RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 PRDX3P30048 256 aaKnown RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 GGT5P36269 586 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 INHBCP55103 352 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 IRF9Q00978 393 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 TAP2Q03519 686 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 EIF3IQ13347 325 aaKnown RBP11.78□□□□□ -0.52
DDX55-210ENST00000543016 CCSMST1Q4G0I0 132 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 CCDC157Q569K6 752 aa11.78□□□□□ -0.52
DDX55-210ENST00000543016 NKAIN2Q5VXU1 208 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms