RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ZPBPQ9BS86 351 aa9.4□□□□□ -0.9
YBX3-212ENST00000542002 FGF21Q9NSA1 209 aa9.4□□□□□ -0.9
YBX3-212ENST00000542002 ZDHHC18Q9NUE0 388 aa9.4□□□□□ -0.9
YBX3-212ENST00000542002 WDR70Q9NW82 654 aa9.4□□□□□ -0.9
YBX3-212ENST00000542002 DMGDHQ9UI17 866 aaKnown RBP9.4□□□□□ -0.9
YBX3-212ENST00000542002 ADAMTS6Q9UKP5 1117 aa9.4□□□□□ -0.9
YBX3-212ENST00000542002 ACACAQ13085 2346 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 MGAQ8IWI9 3026 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 ISM1B1AKI9 464 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 H3BMH7 237 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 K7ENP7 123 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 MATN2O00339 956 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 NRP2O60462 931 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 RAD1O60671 282 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 KIAA0754O94854 1291 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 TSPAN12O95859 305 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 NTRK1P04629 796 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 LIFP15018 202 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 PSMB5P28074 263 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 GRIA3P42263 894 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 TUBB4BP68371 445 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 CYP4F2P78329 520 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 GUCY2DQ02846 1103 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 CKAP4Q07065 602 aaKnown RBP9.39□□□□□ -0.91
YBX3-212ENST00000542002 MGAT5Q09328 741 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 TUBB2AQ13885 445 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 KIR2DS3Q14952 304 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 CYP2A13Q16696 494 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 ZXDCQ2QGD7 858 aaPredicted RBP9.39□□□□□ -0.91
YBX3-212ENST00000542002 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.39□□□□□ -0.91
YBX3-212ENST00000542002 HECTD2Q5U5R9 776 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 KIAA1614Q5VZ46 1190 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 LCN10Q6JVE6 187 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 INO80CQ6PI98 192 aaPredicted RBP9.39□□□□□ -0.91
YBX3-212ENST00000542002 PCSK4Q6UW60 755 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 C3orf62Q6ZUJ4 267 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 STRA8Q7Z7C7 330 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 GALNT7Q86SF2 657 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 ZC3HC1Q86WB0 502 aaKnown RBP9.39□□□□□ -0.91
YBX3-212ENST00000542002 PPP1R3BQ86XI6 285 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 CACNA2D3Q8IZS8 1091 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 CARFQ8N187 725 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 DNAJC22Q8N4W6 341 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 GALNT6Q8NCL4 622 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 OR2L8Q8NGY9 312 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 OR1L3Q8NH93 324 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 GSDMBQ8TAX9 411 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 PYROXD1Q8WU10 500 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 SNRNP27Q8WVK2 155 aaKnown RBP9.39□□□□□ -0.91
YBX3-212ENST00000542002 RAD51AP1Q96B01 352 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 PKP4Q99569 1192 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 TUBB2BQ9BVA1 445 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 ULBP3Q9BZM4 244 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 SPRTNQ9H040 489 aaPredicted RBP9.39□□□□□ -0.91
YBX3-212ENST00000542002 LRRC4CQ9HCJ2 640 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 IKZF3Q9UKT9 509 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 VWA7Q9Y334 891 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 COMMD10Q9Y6G5 202 aa9.39□□□□□ -0.91
YBX3-212ENST00000542002 CACNA1BQ00975 2339 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 PIKFYVEQ9Y2I7 2098 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 A0A0J9YY10 115 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 TCRBV9S1A1TA0A576 114 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 MYO1CO00159 1063 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 TERTO14746 1132 aaKnown RBP9.38□□□□□ -0.91
YBX3-212ENST00000542002 EIF3HO15372 352 aaKnown RBP eCLIP9.38□□□□□ -0.91
YBX3-212ENST00000542002 VPS26AO75436 327 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 TUBB4AP04350 444 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 RPN2P04844 631 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 MPC1LP0DKB6 136 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 ERGP11308 486 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 FDXRP22570 491 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 ECHS1P30084 290 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 MAGEA4P43358 317 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 ARL4DP49703 201 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 ACY1Q03154 408 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 VAC14Q08AM6 782 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 SLC5A12Q1EHB4 618 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 MANEAQ5SRI9 462 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 FCRL6Q6DN72 434 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 FAM199XQ6PEV8 388 aaPredicted RBP9.38□□□□□ -0.91
YBX3-212ENST00000542002 C6orf15Q6UXA7 325 aaPredicted RBP9.38□□□□□ -0.91
YBX3-212ENST00000542002 CCDC81Q6ZN84 652 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 NEK10Q6ZWH5 1172 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 CEP97Q8IW35 865 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 PALM2Q8IXS6 379 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 LRRC56Q8IYG6 542 aaPredicted RBP9.38□□□□□ -0.91
YBX3-212ENST00000542002 NLGN4XQ8N0W4 816 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 GPATCH11Q8N954 259 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 PPFIBP2Q8ND30 876 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 LRRN4CLQ8ND94 238 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 NLGN4YQ8NFZ3 816 aaPredicted RBP9.38□□□□□ -0.91
YBX3-212ENST00000542002 OR2A1Q8NGT9 310 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 OR9A1PQ8NGU1 263 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 HMGCLL1Q8TB92 370 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 TRIM44Q96DX7 344 aaPredicted RBP9.38□□□□□ -0.91
YBX3-212ENST00000542002 FOPNLQ96NB1 174 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 BBC3Q96PG8 261 aaPredicted RBP9.38□□□□□ -0.91
YBX3-212ENST00000542002 RUFY1Q96T51 708 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 RAB17Q9H0T7 212 aa9.38□□□□□ -0.91
YBX3-212ENST00000542002 CCDC68Q9H2F9 335 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms