RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 HIST1H2ADP20671 130 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 MNX1P50219 401 aaPredicted RBP16.48■□□□□ 0.23
USP28-208ENST00000540438 GALK1P51570 392 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 NAE1Q13564 534 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 VTCN1Q7Z7D3 282 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 PDPRQ8NCN5 879 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 HIST1H2AHQ96KK5 128 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 UHRF1Q96T88 793 aaPredicted RBP16.48■□□□□ 0.23
USP28-208ENST00000540438 HIST1H2AJQ99878 128 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 HAUS8Q9BT25 410 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 H2AFJQ9BTM1 129 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 NUMA1Q14980 2115 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 TSPAN6O43657 245 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ANXA6P08133 673 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 PFKLP17858 780 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 TNFRSF1BP20333 461 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 NSG1P42857 185 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 PWP1Q13610 501 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 CACHD1Q5VU97 1274 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 GRAMD4Q6IC98 578 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 CNKSR3Q6P9H4 555 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 USP45Q70EL2 814 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 BPIFB6Q8NFQ5 453 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 MAL2Q969L2 176 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ACDQ96AP0 544 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 C1QTNF3Q9BXJ4 246 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 DGCR6LQ9BY27 220 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 BTBD3Q9Y2F9 522 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 CFAP20Q9Y6A4 193 aaKnown RBP16.48■□□□□ 0.23
USP28-208ENST00000540438 K7ESM1 405 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 TRMUO75648 421 aaKnown RBP16.47■□□□□ 0.23
USP28-208ENST00000540438 ALBP02768 609 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 NUDT7P0C024 238 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 MYOGP15173 224 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 SIM2Q14190 667 aaPredicted RBP16.47■□□□□ 0.23
USP28-208ENST00000540438 LDLRAP1Q5SW96 308 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 GRASPQ7Z6J2 395 aaPredicted RBP16.47■□□□□ 0.23
USP28-208ENST00000540438 OR2A12Q8NGT7 310 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 FIBINQ8TAL6 211 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 RHNO1Q9BSD3 238 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 HEBP1Q9NRV9 189 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 ZNF451Q9Y4E5 1061 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 FADS2P1A8MWK0 482 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 E7EQ34 232 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 CD247P20963 164 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 VIPR2P41587 438 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 MAP7Q14244 749 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 XKR6Q5GH73 641 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 SULT1C3Q6IMI6 304 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 KCTD8Q6ZWB6 473 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 ISG20Q96AZ6 181 aaKnown RBP16.47■□□□□ 0.23
USP28-208ENST00000540438 FAM120BQ96EK7 910 aaKnown RBP16.47■□□□□ 0.23
USP28-208ENST00000540438 HTATIP2Q9BUP3 242 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 TOR3AQ9H497 397 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 C1orf109Q9NX04 203 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 ZDHHC3Q9NYG2 299 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 MICAL3Q7RTP6 2002 aa16.47■□□□□ 0.23
USP28-208ENST00000540438 A0A1W2PPW3 197 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 PABPN1LA6NDY0 278 aaKnown RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 YY2O15391 372 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 RASAL1O95294 804 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 CTSLP07711 333 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 PABPC1P11940 636 aaKnown RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 EPCAMP16422 314 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 CD22P20273 847 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 SPINT3P49223 89 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 RPS14P62263 151 aaKnown RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 KIAA0040Q15053 153 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 SLC36A3Q495N2 470 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 CES5AQ6NT32 575 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 ZCCHC8Q6NZY4 707 aaKnown RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 CYP2U1Q7Z449 544 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 UBE2FQ969M7 185 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 PPP3R2Q96LZ3 170 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 PAK6Q9NQU5 681 aaPredicted RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 RSL24D1Q9UHA3 163 aaKnown RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 PLAGL1Q9UM63 463 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 H0Y858 1186 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 UPK1AO00322 258 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 CXCR6O00574 342 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 ETHE1O95571 254 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 STATHP02808 62 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 CAPNS1P04632 268 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 PIM1P11309 404 aaPredicted RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 XPAP23025 273 aaPredicted RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 S100A3P33764 101 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 RECQLP46063 649 aaPredicted RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 LSM3P62310 102 aaKnown RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 CARD16Q5EG05 197 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 TMTC4Q5T4D3 741 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 XKR5Q6UX68 686 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 SLC47A1Q96FL8 570 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 LRRC3BQ96PB8 259 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 ARMC7Q9H6L4 198 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 VNN3Q9NY84 501 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 PKD2L2Q9NZM6 624 aa16.46■□□□□ 0.23
USP28-208ENST00000540438 PNMA8BQ9ULN7 279 aaPredicted RBP16.46■□□□□ 0.23
USP28-208ENST00000540438 SDC1P18827 310 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 JAK1P23458 1154 aa16.45■□□□□ 0.22
USP28-208ENST00000540438 ARSFP54793 590 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms