RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 IGHV4-59P01825 116 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 OR2T7P0C7T2 308 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 TRIM49P0CI25 452 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 TRIM49CP0CI26 452 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 CEACAM1P13688 526 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 TYMPP19971 482 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SLC6A6P31641 620 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 MC5RP33032 325 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 BMXP51813 675 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 LUMP51884 338 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 TPD52P55327 224 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 CDR2Q01850 454 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 GPR17Q13304 367 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 TEAD2Q15562 447 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SGSM1Q2NKQ1 1148 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 CRY2Q49AN0 593 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 KRBOX4Q5JUW0 171 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SPECC1Q5M775 1068 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 ELFN2Q5R3F8 820 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 C11orf63Q6NUN7 778 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 CORO6Q6QEF8 472 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 C11orf57Q6ZUT1 292 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 SPATA21Q7Z572 469 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SLFN11Q7Z7L1 901 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 METTL23Q86XA0 190 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 THNSL1Q8IYQ7 743 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 LSMEM2Q8N112 164 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 CRYBG2Q8N1P7 616 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 NIPA2Q8N8Q9 360 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 OR1J1Q8NGS3 322 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 OR2AJ1Q8NGZ0 328 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 KIF18AQ8NI77 898 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 ZFAND2BQ8WV99 257 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 ROBO4Q8WZ75 1007 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SYN2Q92777 582 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 ATP6V1E2Q96A05 226 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SPDL1Q96EA4 605 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SENP5Q96HI0 755 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 GMPPAQ96IJ6 420 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 ZNF558Q96NG5 402 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 SLC22A12Q96S37 553 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 URM1Q9BTM9 101 aaKnown RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 ABHD6Q9BV23 337 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 GTPBP2Q9BX10 602 aaKnown RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 UBXN6Q9BZV1 441 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 GFRA4Q9GZZ7 299 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 P2RY12Q9H244 342 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 ANKZF1Q9H8Y5 726 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 CNOT10Q9H9A5 744 aaKnown RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 GRPEL1Q9HAV7 217 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 WSB2Q9NYS7 404 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 TBC1D7Q9P0N9 293 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 RASAL2Q9UJF2 1139 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 PADI2Q9Y2J8 665 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 MMP24Q9Y5R2 645 aa2.52□□□□□ -2.01
CD44-238ENST00000534296 GREB1LQ9C091 1923 aaPredicted RBP2.52□□□□□ -2.01
CD44-238ENST00000534296 IGHV4-4A0A075B6R2 117 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 A0A087WW49 117 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 IGKV3D-20A0A0C4DH25 116 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 A0A0J9YWU9 116 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 TEX13DA0A0J9YY54 714 aaPredicted RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 FAM170AA1A519 330 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 DNM1LO00429 736 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 CLDN4O14493 209 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 KLF11O14901 512 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ATP6V0E1O15342 81 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 LUC7L3O95232 432 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 CD48P09326 243 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 QDPRP09417 244 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ZNF26P17031 533 aaPredicted RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 MNDAP41218 407 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 WNT5AP41221 380 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 TAF6P49848 677 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ASCL1P50553 236 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 CAPZA1P52907 286 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 RAD23AP54725 363 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 HERV-K104P61576 105 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 CX3CL1P78423 397 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 SCN1BQ07699 218 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 LGALS3BPQ08380 585 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 MDH1BQ5I0G3 518 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 TEX38Q6PEX7 206 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 SHQ1Q6PI26 577 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 MOXD1Q6UVY6 613 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 LINGO4Q6UY18 593 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ZNF497Q6ZNH5 498 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ERN2Q76MJ5 926 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 MYPOPQ86VE0 399 aaPredicted RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 DZIP1Q86YF9 867 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 CPSF7Q8N684 471 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 ZNF383Q8NA42 475 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 TDRD5Q8NAT2 981 aaKnown RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 CAMKVQ8NCB2 501 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 DBF4BQ8NFT6 615 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 HSD17B8Q92506 261 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 MOB3AQ96BX8 217 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 MAGED4Q96JG8 741 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 RMDN2Q96LZ7 410 aa2.51□□□□□ -2.01
CD44-238ENST00000534296 ZNF830Q96NB3 372 aaPredicted RBP2.51□□□□□ -2.01
CD44-238ENST00000534296 ZMAT2Q96NC0 199 aaKnown RBP2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms