RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CACNA1BQ00975 2339 aa19.2■□□□□ 0.66
CPSF1-209ENST00000532725 MYO1CO00159 1063 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 PRICKLE3O43900 615 aaPredicted RBP19.19■□□□□ 0.66
CPSF1-209ENST00000532725 EBLN1P0CF75 366 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 FGF5P12034 268 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 PVRP15151 417 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 ST6GAL1P15907 406 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 ECHS1P30084 290 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 ARL4DP49703 201 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 TGIF1Q15583 401 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 CYP2A13Q16696 494 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 FAM45BPQ6NSW5 357 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 PIWIL4Q7Z3Z4 852 aaKnown RBP19.19■□□□□ 0.66
CPSF1-209ENST00000532725 RELL1Q8IUW5 271 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 OR9A1PQ8NGU1 263 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 FAM45AQ8TCE6 357 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 HNRNPLLQ8WVV9 542 aaKnown RBP19.19■□□□□ 0.66
CPSF1-209ENST00000532725 CDKL2Q92772 493 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 RAB11FIP5Q9BXF6 653 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 L2HGDHQ9H9P8 463 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 PCDHB11Q9Y5F2 797 aa19.19■□□□□ 0.66
CPSF1-209ENST00000532725 ISM1B1AKI9 464 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 KLK10O43240 276 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 TSPAN12O95859 305 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 CATP04040 527 aaKnown RBP19.18■□□□□ 0.66
CPSF1-209ENST00000532725 LIPCP11150 499 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 ACY1Q03154 408 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 TLE3Q04726 772 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 SLC5A12Q1EHB4 618 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 TRIM73Q86UV7 250 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 BPHLQ86WA6 291 aaPredicted RBP19.18■□□□□ 0.66
CPSF1-209ENST00000532725 DLG3Q92796 817 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 PKP4Q99569 1192 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 KLHL25Q9H0H3 589 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 RHOJQ9H4E5 214 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 FGF21Q9NSA1 209 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 SPATA7Q9P0W8 599 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 MTRF1LQ9UGC7 380 aaKnown RBP19.18■□□□□ 0.66
CPSF1-209ENST00000532725 LNPEPQ9UIQ6 1025 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 PILRAQ9UKJ1 303 aa19.18■□□□□ 0.66
CPSF1-209ENST00000532725 SDK2Q58EX2 2172 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 STMND1H3BQB6 276 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 ZBTB14O43829 449 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 SPAG6O75602 509 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 ERGP11308 486 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 RGS4P49798 205 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 TUBB4BP68371 445 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 ILF2Q12905 390 aaKnown RBP19.17■□□□□ 0.66
CPSF1-209ENST00000532725 ZIC1Q15915 447 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.17■□□□□ 0.66
CPSF1-209ENST00000532725 TMTC4Q5T4D3 741 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 LRRC8EQ6NSJ5 796 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 TMEM207Q6UWW9 146 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 LRRN4CLQ8ND94 238 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 FBF1Q8TES7 1133 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 SLC22A18Q96BI1 424 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 ZNF501Q96CX3 271 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-209ENST00000532725 ELMO2Q96JJ3 720 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 FCRL4Q96PJ5 515 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 CPNE1Q99829 537 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 CHRNA10Q9GZZ6 450 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 TSPYL1Q9H0U9 437 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 PDE7BQ9NP56 450 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 SOHLH2Q9NX45 425 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 RARRES3Q9UL19 164 aa19.17■□□□□ 0.66
CPSF1-209ENST00000532725 TMEM184BQ9Y519 407 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-209ENST00000532725 A0A0J9YY10 115 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 FAM95CA0A1B0GW59 222 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 A0A1W2PPV9 198 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 MSL3P1P0C860 447 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 ZNF28P17035 718 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 TAS2R39P59534 338 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 IL2P60568 153 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 PDAP1Q13442 181 aaKnown RBP19.16■□□□□ 0.66
CPSF1-209ENST00000532725 TUBB3Q13509 450 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 FASTKQ14296 549 aaKnown RBP19.16■□□□□ 0.66
CPSF1-209ENST00000532725 ARHGAP19Q14CB8 494 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 GPR19Q15760 415 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 KBTBD12Q3ZCT8 623 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 CYB5D1Q6P9G0 228 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 C19orf48Q6RUI8 117 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 CEP128Q6ZU80 1094 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 UBE2R2Q712K3 238 aaPredicted RBP19.16■□□□□ 0.66
CPSF1-209ENST00000532725 TIPARPQ7Z3E1 657 aaKnown RBP19.16■□□□□ 0.66
CPSF1-209ENST00000532725 TAX1BP1Q86VP1 789 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 PPP1R3BQ86XI6 285 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 FAM20CQ8IXL6 584 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 RAB42Q8N4Z0 105 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 NKD1Q969G9 470 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 TCTN2Q96GX1 697 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 PDLIM5Q96HC4 596 aaKnown RBP19.16■□□□□ 0.66
CPSF1-209ENST00000532725 VPS39Q96JC1 886 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 SLC12A9Q9BXP2 914 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 SYTL2Q9HCH5 934 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 FAM60AQ9NP50 221 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 ADAMTS6Q9UKP5 1117 aa19.16■□□□□ 0.66
CPSF1-209ENST00000532725 MTO1Q9Y2Z2 717 aaKnown RBP19.16■□□□□ 0.66
CPSF1-209ENST00000532725 CFAP47Q6ZTR5 3102 aa19.15■□□□□ 0.66
CPSF1-209ENST00000532725 SLC16A5O15375 505 aa19.15■□□□□ 0.66
CPSF1-209ENST00000532725 EFSO43281 561 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms