RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SNX6Q9UNH7 406 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 C15orf41Q9Y2V0 281 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 TICRRQ7Z2Z1 1910 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 UGDHO60701 494 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 BCAS2O75934 225 aaPredicted RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 ACADLP28330 430 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 MSX2P35548 267 aaPredicted RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 SESN3P58005 492 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 CHIT1Q13231 466 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 NAE1Q13564 534 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 NFE2L1Q14494 772 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 PON2Q15165 354 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 TLR1Q15399 786 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 SDE2Q6IQ49 451 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 FAM83HQ6ZRV2 1179 aaPredicted RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 ZFAND4Q86XD8 727 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 MINDY1Q8N5J2 469 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 PYDC1Q8WXC3 89 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 VPS33AQ96AX1 596 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 MTFMTQ96DP5 389 aaKnown RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 GUCD1Q96NT3 240 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 OR4K3Q96R72 315 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 HOPXQ9BPY8 73 aaPredicted RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 SLC39A3Q9BRY0 314 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 C1QTNF2Q9BXJ5 285 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 LRTM1Q9HBL6 345 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 FBXL12Q9NXK8 326 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 ASIC5Q9NY37 505 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 CIDEBQ9UHD4 219 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 ANGPTL2Q9UKU9 493 aa20.13■□□□□ 0.81
VPS28-209ENST00000528142 POLR3HQ9Y535 204 aaPredicted RBP20.13■□□□□ 0.81
VPS28-209ENST00000528142 SERTM1A2A2V5 107 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 PRORSD1PA6NEY8 169 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 EEDO75530 441 aaKnown RBP20.12■□□□□ 0.81
VPS28-209ENST00000528142 JUPP14923 745 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 COL9A1P20849 921 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 TRIM23P36406 574 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 RPL38P63173 70 aaKnown RBP20.12■□□□□ 0.81
VPS28-209ENST00000528142 MAD2L1Q13257 205 aaPredicted RBP20.12■□□□□ 0.81
VPS28-209ENST00000528142 STARD3Q14849 445 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 KIAA0040Q15053 153 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 LIPJQ5W064 366 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 RALGPS2Q86X27 583 aaPredicted RBP20.12■□□□□ 0.81
VPS28-209ENST00000528142 TP53I13Q8NBR0 393 aaPredicted RBP20.12■□□□□ 0.81
VPS28-209ENST00000528142 HIPK4Q8NE63 616 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 SELENOMQ8WWX9 145 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 TACO1Q9BSH4 297 aaKnown RBP20.12■□□□□ 0.81
VPS28-209ENST00000528142 SLC6A17Q9H1V8 727 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 FBRSQ9HAH7 460 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 SUCOQ9UBS9 1254 aaKnown RBP20.12■□□□□ 0.81
VPS28-209ENST00000528142 PRKAB1Q9Y478 270 aa20.12■□□□□ 0.81
VPS28-209ENST00000528142 CCDC154A6NI56 674 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 NPIPB8E9PQR5 432 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 MAP3K7O43318 606 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 PLRG1O43660 514 aaKnown RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 KLF8O95600 359 aaPredicted RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 CD22P20273 847 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 JAK1P23458 1154 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 NEK2P51955 445 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 PRKG2Q13237 762 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 FLOT2Q14254 428 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 INPP5AQ14642 412 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 IRF4Q15306 451 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 IMPG1Q17R60 797 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 PLA2G4EQ3MJ16 856 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 PRPF38BQ5VTL8 546 aaKnown RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 DOK6Q6PKX4 331 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 RNF111Q6ZNA4 994 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 TRMT11Q7Z4G4 463 aaKnown RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 FAM156AQ8NDB6 213 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 ZDHHC5Q9C0B5 715 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 OR52A5Q9H2C5 316 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 ELOVL6Q9H5J4 265 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 UBE2ZQ9H832 354 aaPredicted RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 GID8Q9NWU2 228 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 C1orf109Q9NX04 203 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 ABCD2Q9UBJ2 740 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 SLC23A2Q9UGH3 650 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 EIF3LQ9Y262 564 aaKnown RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 PIAS3Q9Y6X2 628 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 DYTNA2CJ06 578 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 RSL1D1O76021 490 aaKnown RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 PAK4O96013 591 aaPredicted RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 PRPH2P23942 346 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 HALP42357 657 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 SLC7A2P52569 658 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 RPS21P63220 83 aaKnown RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 PAGE3Q5JUK9 113 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 SAMD4BQ5PRF9 694 aaKnown RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 LRRC74BQ6ZQY2 392 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 PPFIBP2Q8ND30 876 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 ZNF480Q8WV37 535 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 LRRC58Q96CX6 371 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 ASB9Q96DX5 294 aa20.11■□□□□ 0.81
VPS28-209ENST00000528142 LEF1Q9UJU2 399 aaPredicted RBP20.11■□□□□ 0.81
VPS28-209ENST00000528142 C2CD4DB7Z1M9 353 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 H3BNX3 289 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 MBTPS2O43462 519 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 SEC22BO75396 215 aa20.1■□□□□ 0.81
VPS28-209ENST00000528142 HOXB2P14652 356 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms