RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PPP2R3CQ969Q6 453 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 NACC2Q96BF6 587 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TADA1Q96BN2 335 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PGM2Q96G03 612 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 LMLNQ96KR4 655 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SNX22Q96L94 193 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ZNF778Q96MU6 729 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ZNF599Q96NL3 588 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PSKH2Q96QS6 385 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MYADMQ96S97 322 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CYTH2Q99418 400 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 KLF6Q99612 283 aaPredicted RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 CDCA3Q99618 268 aaPredicted RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 SH3GL1Q99961 368 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 KXD1Q9BQD3 176 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MGME1Q9BQP7 344 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 C1orf43Q9BWL3 253 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TM6SF2Q9BZW4 377 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 IL22Q9GZX6 179 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TRABDQ9H4I3 376 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 EBF3Q9H4W6 596 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 LDAHQ9H6V9 325 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 NOD2Q9HC29 1040 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MLXIPLQ9NP71 852 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 FANCFQ9NPI8 374 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PPANQ9NQ55 473 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 SERHLQ9NQF3 203 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SPHK2Q9NRA0 654 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CHRAC1Q9NRG0 131 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PAPOLBQ9NRJ5 636 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 TM7SF3Q9NS93 570 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 DUS2Q9NX74 493 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 NKIRAS2Q9NYR9 191 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TBC1D14Q9P2M4 693 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SLC2A6Q9UGQ3 507 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TRPS1Q9UHF7 1281 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SLC24A2Q9UI40 661 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ADAM21Q9UKJ8 722 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PLA2G2DQ9UNK4 145 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CHKBQ9Y259 395 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MAN2B2Q9Y2E5 1009 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MED16Q9Y2X0 877 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 AAR2Q9Y312 384 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 TCAF1Q9Y4C2 921 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 KCTD3Q9Y597 815 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 RAI2Q9Y5P3 530 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PSAT1Q9Y617 370 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TNRC6BQ9UPQ9 1833 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 LAMA1P25391 3075 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 A0A0U1RQS6 177 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 ZCWPW2A0A1B0GU75 182 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 A0A1W2PPM1 405 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 OTOL1A6NHN0 477 aaPredicted RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 AQP12BA6NM10 295 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 CLCA1A8K7I4 914 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 B9A039 149 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 TRIM49D1C9J1S8 452 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 GOLGA8RI6L899 631 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 SLC9A3R1O14745 358 aaPredicted RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 BUD23O43709 281 aaKnown RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 USP1O94782 785 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PIGNO95427 931 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 NDST3O95803 873 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 IGSF6O95976 241 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PENKP01210 267 aaPredicted RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 MPOP05164 745 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 FGF1P05230 155 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 POLBP06746 335 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 C8BP07358 591 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PDHA1P08559 390 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 GSTA2P09210 222 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 CKMT1AP12532 417 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 SRCP12931 536 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 CHN1P15882 459 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 FCARP24071 287 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 GKP32189 559 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 GDNFP39905 211 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 SERPINH1P50454 418 aaKnown RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 PLK1P53350 603 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PER3P56645 1201 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 CTXN1P60606 82 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 AP2B1P63010 937 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 GNGT1P63211 74 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 CDK18Q07002 472 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 MESP2Q0VG99 397 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 MSLNQ13421 630 aaPredicted RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 ADAM15Q13444 863 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PTK2BQ14289 1009 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 RFTN1Q14699 578 aaPredicted RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 PTPRCAPQ14761 206 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PTPRRQ15256 657 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 CNGA3Q16281 694 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 HSP90AA5PQ58FG0 334 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PCID2Q5JVF3 399 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 MPP7Q5T2T1 576 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 PHF19Q5T6S3 580 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 TMEM215Q68D42 235 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 NAIF1Q69YI7 327 aaPredicted RBP4.12□□□□□ -1.75
CD44-226ENST00000527889 C22orf39Q6P5X5 142 aa4.12□□□□□ -1.75
CD44-226ENST00000527889 SLC23A3Q6PIS1 610 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms