RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 GAPDHSO14556 408 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 KCNN4O15554 427 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 PSMD3O43242 534 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A9O60656 530 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 PHF2O75151 1096 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 CDH16O75309 829 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 MTX2O75431 263 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 POP7O75817 140 aaKnown RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 FTCDO95954 541 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 SLC4A1P02730 911 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 C9P02748 559 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 ITGB2P05107 769 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 ABHD2P08910 425 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 ANKRD34CP0C6C1 535 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 PABPC4LP0CB38 370 aaKnown RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A6P19224 532 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A1P22309 533 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A4P22310 534 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 MPSTP25325 297 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 TPP2P29144 1249 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 GSTT1P30711 240 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 STIP1P31948 543 aaKnown RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 STX2P32856 288 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A3P35503 534 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 HADHAP40939 763 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 HALP42357 657 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 POLE2P56282 527 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 CALCOCO2Q13137 446 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 NFATC2Q13469 925 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 MYBPC3Q14896 1274 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 TGIF1Q15583 401 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 TBCCQ15814 346 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 KHDC1Q4VXA5 237 aaKnown RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 TAF1BQ53T94 588 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 MANEAQ5SRI9 462 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 GPRC6AQ5T6X5 926 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 METRNLQ641Q3 311 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 CRTC3Q6UUV7 619 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 C1orf229Q6ZS94 237 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 ZFAND4Q86XD8 727 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 ZNF761Q86XN6 746 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 RELL1Q8IUW5 271 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 KIRREL3Q8IZU9 778 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 FITM2Q8N6M3 262 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 RASGEF1AQ8N9B8 481 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 GDAP1Q8TB36 358 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 HEXDCQ8WVB3 486 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 TTC9Q92623 222 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 NKD1Q969G9 470 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 SGF29Q96ES7 293 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 SPATA13Q96N96 652 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 FAM167BQ9BTA0 163 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 SPRY4Q9C004 299 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 DDX47Q9H0S4 455 aaKnown RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 OSGEPL1Q9H4B0 414 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 C10orf88Q9H8K7 445 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A7Q9HAW7 530 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A10Q9HAW8 530 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 UGT1A8Q9HAW9 530 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 OCIAD1Q9NX40 245 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 TUBA8Q9NY65 449 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 PTTG2Q9NZH5 202 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 FOXJ2Q9P0K8 574 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 TMEM9Q9P0T7 183 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 SCHIP1Q9P0W5 487 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-207ENST00000507401 EPHA6Q9UF33 1036 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 ACSL5Q9ULC5 683 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 STK38LQ9Y2H1 464 aa7.84□□□□□ -1.15
SCN1A-207ENST00000507401 BAHCC1Q9P281 2608 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 MN1Q10571 1320 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-207ENST00000507401 EFCAB7A8K855 629 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 PDZK1P1A8MUH7 402 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 TCP11X1B4DZS4 312 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 DDX3YO15523 660 aaKnown RBP7.83□□□□□ -1.16
SCN1A-207ENST00000507401 PRPF4O43172 522 aaKnown RBP eCLIP7.83□□□□□ -1.16
SCN1A-207ENST00000507401 RIPK2O43353 540 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 SRP72O76094 671 aaKnown RBP7.83□□□□□ -1.16
SCN1A-207ENST00000507401 UBXN7O94888 489 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 RALBP11234 206 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 BRAFP15056 766 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 AMD1P17707 334 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 MSH3P20585 1137 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 RPL10P27635 214 aaKnown RBP7.83□□□□□ -1.16
SCN1A-207ENST00000507401 MAP4P27816 1152 aaKnown RBP7.83□□□□□ -1.16
SCN1A-207ENST00000507401 ARSDP51689 593 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 KLF1Q13351 362 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-207ENST00000507401 SNX1Q13596 522 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 KRT72Q14CN4 511 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 CYP1B1Q16678 543 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 GPR33Q49SQ1 333 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 LIN52Q52LA3 116 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 KCTD11Q693B1 232 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 DENND5AQ6IQ26 1287 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 TMEM220Q6QAJ8 160 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 FAM151BQ6UXP7 276 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 CEACAM20Q6UY09 585 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 TDRPQ86YL5 185 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 TRAPPC5Q8IUR0 188 aa7.83□□□□□ -1.16
SCN1A-207ENST00000507401 TRIM48Q8IWZ4 208 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms