RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 RFPL3O75679 317 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 TCEA3O75764 348 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 WISP3O95389 354 aaPredicted RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 MATN4O95460 622 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 C1orf105O95561 183 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 TSPAN12O95859 305 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 ALDOAP04075 364 aaKnown RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 C2P06681 752 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 GP1BAP07359 652 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 C8GP07360 202 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 UQCRHP07919 91 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 SLC35E2BP0CK96 405 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 CCDC166P0CW27 439 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 MAP4P27816 1152 aaKnown RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 ALDH4A1P30038 563 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 CCNFP41002 786 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 GPR3P46089 330 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 OR1D5P58170 312 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 PRKG2Q13237 762 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 SP140Q13342 867 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 ILKQ13418 452 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 CSHL1Q14406 222 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 RASA2Q15283 850 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 DHRS13Q6UX07 377 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 CYHR1Q6ZMK1 362 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 UBE2R2Q712K3 238 aaPredicted RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 SPRED1Q7Z699 444 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 RIBC1Q8N443 379 aaPredicted RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 OR52E1Q8NGJ3 308 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 MAGEC3Q8TD91 643 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 ANKRD49Q8WVL7 239 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 ZFPM2Q8WW38 1151 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 JPH3Q8WXH2 748 aaPredicted RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 ISL2Q96A47 359 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 RAD51AP1Q96B01 352 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 PDLIM5Q96HC4 596 aaKnown RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 AHCYL2Q96HN2 611 aaKnown RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 PSMG3-AS1Q96PY0 264 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 TBC1D10AQ9BXI6 508 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 ROPN1BQ9BZX4 212 aaPredicted RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 FAM117AQ9C073 453 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 UNKQ9C0B0 810 aaKnown RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 DERL2Q9GZP9 239 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 VPS11Q9H270 941 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 KIR3DX1Q9H7L2 352 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 ROPN1Q9HAT0 212 aaPredicted RBP9.74□□□□□ -0.85
NUP54-203ENST00000504173 POLG2Q9UHN1 485 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 ACOT9Q9Y305 439 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 PCDHGA1Q9Y5H4 931 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 POLQO75417 2590 aa9.74□□□□□ -0.85
NUP54-203ENST00000504173 SETD2Q9BYW2 2564 aaPredicted RBP9.73□□□□□ -0.85
NUP54-203ENST00000504173 CENPEQ02224 2701 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 NPEPPSL1A6NEC2 478 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 ARHGEF33A8MVX0 844 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 GFYI3L273 518 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 BTN3A1O00481 513 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 SLC16A5O15375 505 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 DUX1O43812 170 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 ZBTB14O43829 449 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 UBXN7O94888 489 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 SYF2O95926 243 aaKnown RBP9.73□□□□□ -0.85
NUP54-203ENST00000504173 MPOP05164 745 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 RPLP0P05388 317 aaKnown RBP9.73□□□□□ -0.85
NUP54-203ENST00000504173 LTA4HP09960 611 aaKnown RBP9.73□□□□□ -0.85
NUP54-203ENST00000504173 CDK4P11802 303 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 H2AFXP16104 143 aaPredicted RBP9.73□□□□□ -0.85
NUP54-203ENST00000504173 TYRP1P17643 537 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 AMD1P17707 334 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 KRT15P19012 456 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 CYP2A7P20853 494 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 GMPRP36959 345 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 MAGEA12P43365 314 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 EPHA4P54764 986 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 ATP6V0D1P61421 351 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 E2F1Q01094 437 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 NR1D2Q14995 579 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 KRTAP21-3Q3LHN1 58 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 TBC1D25Q3MII6 688 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 KRT71Q3SY84 523 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 AMZ1Q400G9 498 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.73□□□□□ -0.85
NUP54-203ENST00000504173 ARHGAP40Q5TG30 622 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 BROXQ5VW32 411 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 FBXO38Q6PIJ6 1188 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 TIFABQ6ZNK6 161 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 SPATA6LQ8N4H0 392 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 RAB42Q8N4Z0 105 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 OR10G6Q8NH81 332 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 KCTD4Q8WVF5 259 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 LCN9Q8WX39 176 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 ASB11Q8WXH4 323 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 CABS1Q96KC9 395 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 TSNARE1Q96NA8 513 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 ZIM3Q96PE6 472 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 TMEM109Q9BVC6 243 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 ABCG4Q9H172 646 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 LRRN3Q9H3W5 708 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 SRMSQ9H3Y6 488 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 EPB41L1Q9H4G0 881 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 CPNE5Q9HCH3 593 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms