RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 NCF4Q15080 339 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 IGFBP7Q16270 282 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 DEFB110Q30KQ9 67 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 ZC3H12BQ5HYM0 836 aaKnown RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 RNF187Q5TA31 235 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 C1orf189Q5VU69 101 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 ZNF385CQ66K41 422 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 FIGLAQ6QHK4 219 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 FAM198BQ6UWH4 519 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 MED25Q71SY5 747 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 MCATQ8IVS2 390 aaKnown RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 RASGEF1CQ8N431 466 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 ZBTB2Q8N680 514 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 ZNF655Q8N720 491 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 TMEM102Q8N9M5 508 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 LINC01555Q8NAE3 123 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 PROKR1Q8TCW9 393 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 MAGEC3Q8TD91 643 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 DENND1AQ8TEH3 1009 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 ZUFSPQ96AP4 578 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 BIRC8Q96P09 236 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 IP6K3Q96PC2 410 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 IL17FQ96PD4 163 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 NAP1L3Q99457 506 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 NDC1Q9BTX1 674 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 MENTQ9BUN1 341 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 RAB11FIP5Q9BXF6 653 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 TXLNGQ9NUQ3 528 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 EURLQ9NYK6 297 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 IFT80Q9P2H3 777 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 CIDEBQ9UHD4 219 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 G3BP2Q9UN86 482 aaKnown RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 SRPK3Q9UPE1 567 aa12.27□□□□□ -0.45
PTPRF-214ENST00000496043 PCDHGA9Q9Y5G4 932 aaKnown RBP12.27□□□□□ -0.45
PTPRF-214ENST00000496043 SDR42E2A6NKP2 422 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 GOLGA8KD6RF30 607 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 GOLGA8TH3BQL2 631 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 ZSCAN9O15535 394 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-214ENST00000496043 AVILO75366 819 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 FKBP9O95302 570 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 ESR1P03372 595 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 MLNP12872 115 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 CHRM3P20309 590 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 MAGP20916 626 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 ALAS2P22557 587 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 ARNTP27540 789 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 COILP38432 576 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-214ENST00000496043 VPS41P49754 854 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 PGDP52209 483 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 ARSFP54793 590 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 RRADP55042 308 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 ADARP55265 1226 aaKnown RBP12.26□□□□□ -0.45
PTPRF-214ENST00000496043 CHAF1BQ13112 559 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 KCNJ11Q14654 390 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 COLEC12Q5KU26 742 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 FAM69BQ5VUD6 431 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 CPZQ66K79 652 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 KIAA0930Q6ICG6 404 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-214ENST00000496043 NEPROQ6NW34 567 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 CASC4Q6P4E1 433 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 RAB43Q86YS6 212 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 FAM20CQ8IXL6 584 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 LMNTD1Q8N9Z9 388 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 DLG3Q92796 817 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 MS4A14Q96JA4 679 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 GBP5Q96PP8 586 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 MLXIPLQ9NP71 852 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 SAMD15Q9P1V8 674 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 DHCR7Q9UBM7 475 aaKnown RBP12.26□□□□□ -0.45
PTPRF-214ENST00000496043 NDOR1Q9UHB4 597 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 VPS9D1Q9Y2B5 631 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 KLHL20Q9Y2M5 609 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 ZNF451Q9Y4E5 1061 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 PCDHGB7Q9Y5F8 929 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 NFS1Q9Y697 457 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 SEC16AO15027 2179 aa12.26□□□□□ -0.45
PTPRF-214ENST00000496043 TARM1B6A8C7 271 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 ZNF185O15231 689 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 PRICKLE3O43900 615 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 KLF7O75840 302 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 IGHEP01854 428 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 PDGFAP04085 211 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 CTSBP07858 339 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 PIM1P11309 404 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 OGNP20774 298 aaKnown RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 GRIA3P42263 894 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 KCTD19Q17RG1 926 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 TYSND1Q2T9J0 566 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 NKAIN1Q4KMZ8 207 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 CTSL3PQ5NE16 218 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 TTC27Q6P3X3 843 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 TAX1BP1Q86VP1 789 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 CAND1Q86VP6 1230 aaKnown RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 MCUQ8NE86 351 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 LPGAT1Q92604 370 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 PTERQ96BW5 349 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 XAB2Q9HCS7 855 aaKnown RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 CRYL1Q9Y2S2 319 aa12.25□□□□□ -0.45
PTPRF-214ENST00000496043 PTRH2Q9Y3E5 179 aaKnown RBP12.25□□□□□ -0.45
PTPRF-214ENST00000496043 FAM237BA0A1B0GVD1 139 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms