RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 RAB7BQ96AH8 199 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 CDK15Q96Q40 435 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 PRPF18Q99633 342 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 EGFL8Q99944 293 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 CD320Q9NPF0 282 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 WWOXQ9NZC7 414 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 FBXL21Q9UKT6 434 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 MMP17Q9ULZ9 603 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 ZFR2Q9UPR6 939 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 WDFY4Q6ZS81 3184 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 FBP2O00757 339 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 LILRB5O75023 590 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 PRR35P0CG20 571 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 ME2P23368 584 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 GDF5P43026 501 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 ATP4BP51164 291 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 YBX1P67809 324 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 AGKQ53H12 422 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 XKR5Q6UX68 686 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 TRMT11Q7Z4G4 463 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 AMIGO2Q86SJ2 522 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 DDIASQ8IXT1 998 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 PGAM4Q8N0Y7 254 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 LILRA3Q8N6C8 439 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 PHF12Q96QT6 1004 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 IL1RL2Q9HB29 575 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 PARVBQ9HBI1 364 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 PRPF19Q9UMS4 504 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 LAMA1P25391 3075 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 VPS13AQ96RL7 3174 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 SLC5A10A0PJK1 596 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 FAM170BA6NMN3 283 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 QSOX1O00391 747 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 MAN2B1O00754 1011 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 ACOT8O14734 319 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 SLC16A5O15375 505 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 CRCPO75575 148 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TFAP2AP05549 437 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 ENO2P09104 434 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-230ENST00000488543 GABRG2P18507 467 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 ACSL1P33121 698 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 RPIAP49247 311 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 SP140Q13342 867 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 NADK2Q4G0N4 442 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 EOGTQ5NDL2 527 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 RAET1GQ6H3X3 334 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TMEM220Q6QAJ8 160 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 CDYL2Q8N8U2 506 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 OR4F6Q8NGB9 312 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 ZFAND2BQ8WV99 257 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 LRTOMTQ8WZ04 291 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 MPP4Q96JB8 637 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 SERPINI1Q99574 410 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 CCM2Q9BSQ5 444 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 MBNL1Q9NR56 388 aaKnown RBP11.84□□□□□ -0.51
HDAC6-230ENST00000488543 GULP1Q9UBP9 304 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 EBF1Q9UH73 591 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 PCDHGA7Q9Y5G6 932 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3DA0A087WVF3 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3IA0A087WXS9 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3EA0A087X179 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3KA0A087X1G2 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3FA6NER0 549 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3LB9A6J9 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 K7EPI3 171 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3HP0C7X1 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 EPORP19235 508 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 GGT5P36269 586 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 GPR1P46091 355 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 HTR6P50406 440 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 ADPRHP54922 357 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 PSME3P61289 254 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 WSCD2Q2TBF2 565 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 BCL7AQ4VC05 210 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3GQ6DHY5 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3CQ6IPX1 549 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 METTL2BQ6P1Q9 378 aaKnown RBP11.84□□□□□ -0.51
HDAC6-230ENST00000488543 SCIMPQ6UWF3 145 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 EFL1Q7Z2Z2 1120 aaKnown RBP11.84□□□□□ -0.51
HDAC6-230ENST00000488543 TBC1D3Q8IZP1 549 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-230ENST00000488543 OR2T11Q8NH01 316 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 ASZ1Q8WWH4 475 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 EPHX3Q9H6B9 360 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 IPPKQ9H8X2 491 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 EFCAB1Q9HAE3 211 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 C6orf203Q9P0P8 240 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-230ENST00000488543 OPTCQ9UBM4 332 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 FAM8A1Q9UBU6 413 aa11.84□□□□□ -0.51
HDAC6-230ENST00000488543 MYO15AQ9UKN7 3530 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 KRT87PA6NCN2 255 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 VILLO15195 856 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 AP1G1O43747 822 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 ATG13O75143 517 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 MATN4O95460 622 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 CAPN1P07384 714 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 ANXA5P08758 320 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PABPC4LP0CB38 370 aaKnown RBP11.83□□□□□ -0.52
HDAC6-230ENST00000488543 GPX3P22352 226 aa11.83□□□□□ -0.52
HDAC6-230ENST00000488543 PGBD3Q8N328 593 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms