RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 C3orf62Q6ZUJ4 267 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 NEK10Q6ZWH5 1172 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 SLC26A11Q86WA9 606 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 RASGRP3Q8IV61 690 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 RAB42Q8N4Z0 105 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 OR2L8Q8NGY9 312 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 FAM45AQ8TCE6 357 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 MAGEC3Q8TD91 643 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 CDKL2Q92772 493 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 OR2A14Q96R47 310 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 RAB11FIP5Q9BXF6 653 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 B3GNT4Q9C0J1 378 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 NSMCE4AQ9NXX6 385 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 MTRF1LQ9UGC7 380 aaKnown RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 ACSL6Q9UKU0 697 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 CORO1CQ9ULV4 474 aaPredicted RBP14.27□□□□□ -0.13
USP4-212ENST00000486549 ZFYVE26Q68DK2 2539 aa14.27□□□□□ -0.13
USP4-212ENST00000486549 A0A0J9YY10 115 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 FAM95CA0A1B0GW59 222 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 CXorf49A8MYA2 514 aaPredicted RBP14.26□□□□□ -0.13
USP4-212ENST00000486549 STMND1H3BQB6 276 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 SYF2O95926 243 aaKnown RBP14.26□□□□□ -0.13
USP4-212ENST00000486549 GSTA2P09210 222 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 CBSLP0DN79 551 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 FDXRP22570 491 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 CBSP35520 551 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 SKIV2L2P42285 1042 aaKnown RBP14.26□□□□□ -0.13
USP4-212ENST00000486549 RGS4P49798 205 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 ACY1Q03154 408 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 KIR2DS3Q14952 304 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 ZC3HC1Q86WB0 502 aaKnown RBP14.26□□□□□ -0.13
USP4-212ENST00000486549 CTAGE3PQ8IX95 158 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 FAM20CQ8IXL6 584 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 CARFQ8N187 725 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 D2HGDHQ8N465 521 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 EEF1AKMT1Q8WVE0 214 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 LINGO1Q96FE5 620 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 CRELD1Q96HD1 420 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 TRAPPC9Q96Q05 1148 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 OLFM1Q99784 485 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 ZPBPQ9BS86 351 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 PITPNM3Q9BZ71 974 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 LRRC4CQ9HCJ2 640 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 PDE7BQ9NP56 450 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 FGF21Q9NSA1 209 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 TXNDC16Q9P2K2 825 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 RARRES3Q9UL19 164 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 BTRCQ9Y297 605 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 VWA7Q9Y334 891 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 LAMA5O15230 3695 aa14.26□□□□□ -0.13
USP4-212ENST00000486549 ITPR1Q14643 2758 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 MAP3K7O43318 606 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 STK17BO94768 372 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 RHOXF2BP0C7M4 288 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 ZNF28P17035 718 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 MAP4P27816 1152 aaKnown RBP14.25□□□□□ -0.13
USP4-212ENST00000486549 CXADRP78310 365 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 TSTA3Q13630 321 aaPredicted RBP14.25□□□□□ -0.13
USP4-212ENST00000486549 IL11RAQ14626 422 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 CYB5D1Q6P9G0 228 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 CYHR1Q6ZMK1 362 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 UBE2R2Q712K3 238 aaPredicted RBP14.25□□□□□ -0.13
USP4-212ENST00000486549 VASH2Q86V25 355 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 PPP1R3BQ86XI6 285 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 MYO1HQ8N1T3 1032 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 C19orf47Q8N9M1 422 aaKnown RBP14.25□□□□□ -0.13
USP4-212ENST00000486549 LRRN4CLQ8ND94 238 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 OR9A1PQ8NGU1 263 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 FLVCR1-AS1Q8TAF5 88 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 DENND1AQ8TEH3 1009 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 FBF1Q8TES7 1133 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 PKP4Q99569 1192 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 RHOXF2Q9BQY4 288 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 ULBP3Q9BZM4 244 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 RHOJQ9H4E5 214 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 FANCEQ9HB96 536 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 SPATA7Q9P0W8 599 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.25□□□□□ -0.13
USP4-212ENST00000486549 LNPEPQ9UIQ6 1025 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 KLHL20Q9Y2M5 609 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 ANKRD12Q6UB98 2062 aa14.25□□□□□ -0.13
USP4-212ENST00000486549 FAM159BA6NKW6 160 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 MYO1CO00159 1063 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 EIF3FO00303 357 aaPredicted RBP14.24□□□□□ -0.13
USP4-212ENST00000486549 ZBTB14O43829 449 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 RAD1O60671 282 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 KIAA0754O94854 1291 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 TIAF1O95411 115 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 FGF5P12034 268 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 PSMB5P28074 263 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 STX2P32856 288 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 ATP1A2P50993 1020 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 TUBB4BP68371 445 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 RHDQ02161 417 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 SRSF6Q13247 344 aaKnown RBP14.24□□□□□ -0.13
USP4-212ENST00000486549 FASTKQ14296 549 aaKnown RBP14.24□□□□□ -0.13
USP4-212ENST00000486549 ZNF460Q14592 562 aa14.24□□□□□ -0.13
USP4-212ENST00000486549 EFTUD2Q15029 972 aaKnown RBP eCLIP14.24□□□□□ -0.13
USP4-212ENST00000486549 SF1Q15637 639 aaKnown RBP14.24□□□□□ -0.13
USP4-212ENST00000486549 SLC5A12Q1EHB4 618 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms