RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 GSDMDP57764 484 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 HERV-K104P61576 105 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 ZNF415Q09FC8 603 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 PCLAFQ15004 111 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 NECTIN1Q15223 517 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 RNASEH2BQ5TBB1 312 aaKnown RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 FAM205BPQ63HN1 556 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 TRIM65Q6PJ69 517 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 SUSD1Q6UWL2 747 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 BTN2A1Q7KYR7 527 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 CENPTQ96BT3 561 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 PIGQQ9BRB3 760 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 OR2B2Q9GZK3 357 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 MMP27Q9H306 513 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 FGF21Q9NSA1 209 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 BLOC1S4Q9NUP1 217 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 HAUS2Q9NVX0 235 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 P4HTMQ9NXG6 502 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 WBP11Q9Y2W2 641 aaKnown RBP3.32□□□□□ -1.88
VPS41-213ENST00000485955 DIP2BQ9P265 1576 aa3.32□□□□□ -1.88
VPS41-213ENST00000485955 AGRNO00468 2067 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 DCAF1Q9Y4B6 1507 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.31□□□□□ -1.88
VPS41-213ENST00000485955 PI15O43692 258 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 OR2T7P0C7T2 308 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 DNASE1P24855 282 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 PTPN3P26045 913 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 OPRL1P41146 370 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 HNF4AP41235 474 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 CDH13P55290 713 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 GCNT1Q02742 428 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 TAF10Q12962 218 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 GRAPQ13588 217 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 HERC3Q15034 1050 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 E2F5Q15329 346 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 C20orf194Q5TEA3 1177 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 SPINK14Q6IE38 97 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 TMPRSS11BQ86T26 416 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 TMEM173Q86WV6 379 aaPredicted RBP3.31□□□□□ -1.88
VPS41-213ENST00000485955 LINC00346Q8IVM7 164 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 ARHGAP45Q92619 1136 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 OMA1Q96E52 524 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 RAD9AQ99638 391 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 URM1Q9BTM9 101 aaKnown RBP3.31□□□□□ -1.88
VPS41-213ENST00000485955 CPVLQ9H3G5 476 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 ZHX3Q9H4I2 956 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 Q9N2K0 584 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 PANK4Q9NVE7 773 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 PSD3Q9NYI0 1048 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 PPP2R2CQ9Y2T4 447 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 GRIP1Q9Y3R0 1128 aa3.31□□□□□ -1.88
VPS41-213ENST00000485955 LAS1LQ9Y4W2 734 aaKnown RBP3.31□□□□□ -1.88
VPS41-213ENST00000485955 MYH14Q7Z406 1995 aaKnown RBP3.31□□□□□ -1.88
VPS41-213ENST00000485955 MED1Q15648 1581 aaPredicted RBP3.3□□□□□ -1.88
VPS41-213ENST00000485955 GPR75-ASB3A0A0A6YYF3 556 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 FSD2A1L4K1 749 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 HMGB1P1B2RPK0 211 aaPredicted RBP3.3□□□□□ -1.88
VPS41-213ENST00000485955 TSPAN1O60635 241 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 ENTPD3O75355 529 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 CSH1P0DML2 217 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 CSH2P0DML3 217 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 GJA1P17302 382 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 CYP2A7P20853 494 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 JAK1P23458 1154 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 SHC1P29353 583 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 MAZP56270 477 aaKnown RBP3.3□□□□□ -1.88
VPS41-213ENST00000485955 UGP2Q16851 508 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 HLA-BQ31612 363 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 BSPRYQ5W0U4 402 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 TMEM211Q6ICI0 200 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 SLC25A47Q6Q0C1 308 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 TMEM207Q6UWW9 146 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 C4orf50Q6ZRC1 276 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 ZNF595Q8IYB9 648 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 CDK20Q8IZL9 346 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 AFAP1Q8N556 730 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 OR52N5Q8NH56 324 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 C10orf90Q96M02 699 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 ZNF300Q96RE9 604 aaPredicted RBP3.3□□□□□ -1.88
VPS41-213ENST00000485955 NAP1L4Q99733 375 aaKnown RBP3.3□□□□□ -1.88
VPS41-213ENST00000485955 TREX2Q9BQ50 279 aaPredicted RBP3.3□□□□□ -1.88
VPS41-213ENST00000485955 SLC35C2Q9NQQ7 365 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 TBC1D29Q9UFV1 150 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 GRID1Q9ULK0 1009 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 TSPOAP1O95153 1857 aa3.3□□□□□ -1.88
VPS41-213ENST00000485955 ENO4A6NNW6 628 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 MAGEC1O60732 1142 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 NXPH2O95156 264 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 MNDAP41218 407 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 SLC9A3P48764 834 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 PAX9P55771 341 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 ZNF239Q16600 458 aaKnown RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 CA9Q16790 459 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 SYT14P1Q58G82 188 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 TCTEX1D4Q5JR98 221 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 ELFN2Q5R3F8 820 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 ZNF343Q6P1L6 599 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 FIP1L1Q6UN15 594 aaKnown RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 LRRTM1Q86UE6 522 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 SPAG16Q8N0X2 631 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms