RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CPSF7Q8N684 471 aaKnown RBP5.45□□□□□ -1.54
USP40-213ENST00000483216 CCDC112Q8NEF3 446 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 MOSPD2Q8NHP6 518 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 TAS1R2Q8TE23 839 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 PRPF31Q8WWY3 499 aaKnown RBP5.45□□□□□ -1.54
USP40-213ENST00000483216 ANKRD7Q92527 254 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 ZNF622Q969S3 477 aaKnown RBP eCLIP5.45□□□□□ -1.54
USP40-213ENST00000483216 MRPL1Q9BYD6 325 aaKnown RBP5.45□□□□□ -1.54
USP40-213ENST00000483216 PELI2Q9HAT8 420 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 ECHDC1Q9NTX5 307 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 RHCGQ9UBD6 479 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 SLC7A7Q9UM01 511 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 PCDHGB4Q9UN71 923 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 ELP1O95163 1332 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 CCDC171Q6TFL3 1326 aa5.45□□□□□ -1.54
USP40-213ENST00000483216 PREX1Q8TCU6 1659 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 ZWINTO95229 277 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 ZFYVE9O95405 1425 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 IVLP07476 585 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 PRSS56P0CW18 603 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 ACP2P11117 423 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 EPHA2P29317 976 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 NR0B1P51843 470 aaKnown RBP5.44□□□□□ -1.54
USP40-213ENST00000483216 TMEM30BQ3MIR4 351 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 ZNF876PQ49A33 203 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 IGSF11Q5DX21 431 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 CFAP161Q6P656 301 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 FOXP4Q8IVH2 680 aaPredicted RBP5.44□□□□□ -1.54
USP40-213ENST00000483216 LINC00346Q8IVM7 164 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 GUF1Q8N442 669 aaKnown RBP5.44□□□□□ -1.54
USP40-213ENST00000483216 PPFIBP2Q8ND30 876 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 MCUQ8NE86 351 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 ZNF397Q8NF99 534 aaPredicted RBP5.44□□□□□ -1.54
USP40-213ENST00000483216 SENP5Q96HI0 755 aaPredicted RBP5.44□□□□□ -1.54
USP40-213ENST00000483216 CDRT15Q96T59 188 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 RBM4Q9BWF3 364 aaKnown RBP5.44□□□□□ -1.54
USP40-213ENST00000483216 ACKR4Q9NPB9 350 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.44□□□□□ -1.54
USP40-213ENST00000483216 USP32Q8NFA0 1604 aa5.44□□□□□ -1.54
USP40-213ENST00000483216 ARHGEF28Q8N1W1 1705 aaKnown RBP5.43□□□□□ -1.54
USP40-213ENST00000483216 GPR75-ASB3A0A0A6YYF3 556 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 OR6C76A6NM76 312 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 SLC22A2O15244 555 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 CLIC2O15247 247 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 TPOP07202 933 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 CCDC192P0DO97 292 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 GJA1P17302 382 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 ACTN2P35609 894 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 HSPA2P54652 639 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 CBX1P83916 185 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 PPIGQ13427 754 aaKnown RBP eCLIP5.43□□□□□ -1.541e-6■■■□□ 15.1
USP40-213ENST00000483216 BAATQ14032 418 aaPredicted RBP5.43□□□□□ -1.54
USP40-213ENST00000483216 FIGLAQ6QHK4 219 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 ADIPOR2Q86V24 386 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 MINDY1Q8N5J2 469 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 TMEM190Q8WZ59 177 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 LITAFQ99732 161 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 RHNO1Q9BSD3 238 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 PDE7BQ9NP56 450 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 SLC52A3Q9NQ40 469 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 DDX43Q9NXZ2 648 aaKnown RBP5.43□□□□□ -1.54
USP40-213ENST00000483216 MRPL15Q9P015 296 aaKnown RBP5.43□□□□□ -1.54
USP40-213ENST00000483216 FBXO2Q9UK22 296 aaPredicted RBP5.43□□□□□ -1.54
USP40-213ENST00000483216 ZHX1Q9UKY1 873 aaPredicted RBP5.43□□□□□ -1.54
USP40-213ENST00000483216 C2CD2Q9Y426 696 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 NME7Q9Y5B8 376 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 SNX8Q9Y5X2 465 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 MYO5BQ9ULV0 1848 aa5.43□□□□□ -1.54
USP40-213ENST00000483216 SOS1Q07889 1333 aaPredicted RBP5.43□□□□□ -1.54
USP40-213ENST00000483216 TMEM131LA2VDJ0 1609 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 GLOD5A6NK44 160 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 K7ENM7 598 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 HMMRO75330 724 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 MED24O75448 989 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 BEST1O76090 585 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 PGM3O95394 542 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 CHRNB4P30926 498 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 HSD17B4P51659 736 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 UBE2HP62256 183 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 KIAA1644Q3SXP7 199 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 MDH1BQ5I0G3 518 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 MFSD6Q6ZSS7 791 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 ADGRA1Q86SQ6 560 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 ITPRIPQ8IWB1 547 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 OR2AJ1Q8NGZ0 328 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 UTP14AQ9BVJ6 771 aaKnown RBP5.42□□□□□ -1.54
USP40-213ENST00000483216 API5Q9BZZ5 524 aaKnown RBP5.42□□□□□ -1.54
USP40-213ENST00000483216 DPAGT1Q9H3H5 408 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 SCRT2Q9NQ03 307 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.42□□□□□ -1.54
USP40-213ENST00000483216 RBM28Q9NW13 759 aaKnown RBP5.42□□□□□ -1.54
USP40-213ENST00000483216 GRIP1Q9Y3R0 1128 aa5.42□□□□□ -1.54
USP40-213ENST00000483216 NSD3Q9BZ95 1437 aa5.41□□□□□ -1.54
USP40-213ENST00000483216 RIMS1Q86UR5 1692 aaKnown RBP5.41□□□□□ -1.54
USP40-213ENST00000483216 A0A1W2PRB8 838 aa5.41□□□□□ -1.54
USP40-213ENST00000483216 E9PI62 339 aa5.41□□□□□ -1.54
USP40-213ENST00000483216 XRCC3O43542 346 aa5.41□□□□□ -1.54
USP40-213ENST00000483216 MX1P20591 662 aa5.41□□□□□ -1.54
USP40-213ENST00000483216 ITGA3P26006 1051 aa5.41□□□□□ -1.54
USP40-213ENST00000483216 GSDMDP57764 484 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms