RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ANKS6Q68DC2 871 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 SULT1C3Q6IMI6 304 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 EFL1Q7Z2Z2 1120 aaKnown RBP11.87□□□□□ -0.51
SDC1-206ENST00000482879 ZNF438Q7Z4V0 828 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 AMIGO1Q86WK6 493 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 SYTL1Q8IYJ3 562 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 KIAA2013Q8IYS2 634 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 FBXO39Q8N4B4 442 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 C2orf73Q8N5S3 287 aaPredicted RBP11.87□□□□□ -0.51
SDC1-206ENST00000482879 ANKRD42Q8N9B4 389 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 Q8N9G6 341 aaPredicted RBP11.87□□□□□ -0.51
SDC1-206ENST00000482879 LMNTD1Q8N9Z9 388 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 DENND1AQ8TEH3 1009 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 ATL1Q8WXF7 558 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 NAT6Q93015 286 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 CCDC74AQ96AQ1 378 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 FBXL8Q96CD0 374 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 RAB11FIP5Q9BXF6 653 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 KCNK4Q9NYG8 393 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 STOX2Q9P2F5 926 aaPredicted RBP11.87□□□□□ -0.51
SDC1-206ENST00000482879 MID2Q9UJV3 735 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 TMCO1Q9UM00 188 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 ICKQ9UPZ9 632 aa11.87□□□□□ -0.51
SDC1-206ENST00000482879 CNOT1A5YKK6 2376 aaKnown RBP11.86□□□□□ -0.51
SDC1-206ENST00000482879 OR6C74A6NCV1 312 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 TM9SF1O15321 606 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 ZW10O43264 779 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 DLX3O60479 287 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 ZWINTO95229 277 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 MYL2P10916 166 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 CPA3P15088 417 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PNLIPP16233 465 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 CKMT2P17540 419 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 TYRP1P17643 537 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 AMD1P17707 334 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 IMPA1P29218 277 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PKLRP30613 574 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 HNMTP50135 292 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 LIMK1P53667 647 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 OR1D5P58170 312 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 NAE1Q13564 534 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 TSTA3Q13630 321 aaPredicted RBP11.86□□□□□ -0.51
SDC1-206ENST00000482879 FASTKQ14296 549 aaKnown RBP11.86□□□□□ -0.51
SDC1-206ENST00000482879 ARHGAP19Q14CB8 494 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 CYP2A13Q16696 494 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PERM1Q5SV97 790 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 AGTRAPQ6RW13 159 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 ZYG11AQ6WRX3 759 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PIP4P1Q86T03 277 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 TCAIMQ8N3R3 496 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PDPRQ8NCN5 879 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PPFIBP2Q8ND30 876 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 OR2L8Q8NGY9 312 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 RDH11Q8TC12 318 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 IFI44Q8TCB0 444 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 ZNF480Q8WV37 535 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 RHBDF1Q96CC6 855 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PHF21BQ96EK2 531 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 CDC6Q99741 560 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 MENTQ9BUN1 341 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 ATG10Q9H0Y0 220 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 NKIRAS1Q9NYS0 192 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 WWOXQ9NZC7 414 aa11.86□□□□□ -0.51
SDC1-206ENST00000482879 PTBP2Q9UKA9 531 aaKnown RBP11.86□□□□□ -0.51
SDC1-206ENST00000482879 FAM221BA6H8Z2 402 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 G3V2L1 256 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 H3BQF6 201 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 TAPBPO15533 448 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 B4GAT1O43505 415 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 KLK8O60259 260 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 CBFA2T3O75081 653 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 UBXN7O94888 489 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 PROS1P07225 676 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 ERGP11308 486 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 POLR2CP19387 275 aaPredicted RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 ATP5F1P24539 256 aaPredicted RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 AGTR2P50052 363 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 SLC18A1P54219 525 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 EPHA4P54764 986 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 ALDH18A1P54886 795 aaKnown RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 PPP2R2AP63151 447 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 NR1D2Q14995 579 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 C18orf21Q32NC0 220 aaPredicted RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 AMZ1Q400G9 498 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 FBXO48Q5FWF7 155 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 HHATQ5VTY9 493 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 ARMC6Q6NXE6 501 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 KLHL35Q6PF15 583 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 RAB44Q7Z6P3 723 aaPredicted RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 TAX1BP1Q86VP1 789 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 SLC22A9Q8IVM8 553 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 ADGRF3Q8IZF5 1079 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 PTGR2Q8N8N7 351 aaPredicted RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 LINC01555Q8NAE3 123 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 OR10G6Q8NH81 332 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 BAHD1Q8TBE0 780 aaPredicted RBP11.85□□□□□ -0.51
SDC1-206ENST00000482879 MGARPQ8TDB4 240 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 NETO1Q8TDF5 533 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 SMPDL3AQ92484 453 aa11.85□□□□□ -0.51
SDC1-206ENST00000482879 ESAMQ96AP7 390 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms